Construct to hold the information about a map file. More...
#include <cmaplib.h>
Public Attributes | |
CCP4File * | stream |
char * | file_name |
unsigned int | data_mode |
unsigned int | close_mode |
float | cell [6] |
int | spacegroup |
int | map_dim [3] |
int | origin [3] |
int | cell_grid [3] |
int | axes_order [3] |
CMMFile_Symop | symop |
CMMFile_Data | data |
CMMFile_Stats | stats |
CMMFile_Labels | labels |
CMMFile_Skew | skew |
int | reserved [8] |
char | user_access [28] |
Construct to hold the information about a map file.
int _CMMFile::axes_order[3] |
which axis corresponds to x, y, z
Referenced by ccp4_cmap_get_order(), ccp4_cmap_set_order(), parse_mapheader(), and write_mapheader().
float _CMMFile::cell[6] |
unit cell parameters
Referenced by ccp4_cmap_get_cell(), ccp4_cmap_set_cell(), parse_mapheader(), and write_mapheader().
int _CMMFile::cell_grid[3] |
grid size along cell edges
Referenced by ccp4_cmap_get_grid(), ccp4_cmap_set_grid(), parse_mapheader(), and write_mapheader().
unsigned int _CMMFile::close_mode |
Referenced by ccp4_cmap_close(), ccp4_cmap_closemode(), and ccp4_cmap_get_mapstats().
Referenced by ccp4_cmap_get_local_header(), ccp4_cmap_read_row(), ccp4_cmap_read_section(), ccp4_cmap_read_section_header(), ccp4_cmap_seek_row(), ccp4_cmap_seek_section(), ccp4_cmap_set_datamode(), ccp4_cmap_set_dim(), ccp4_cmap_set_local_header(), ccp4_cmap_set_symop(), ccp4_cmap_write_row(), ccp4_cmap_write_section(), ccp4_cmap_write_section_header(), init_cmap_write(), number_sections(), and parse_mapheader().
unsigned int _CMMFile::data_mode |
char* _CMMFile::file_name |
name of file
Referenced by ccp4_cmap_open().
int _CMMFile::map_dim[3] |
size of map array (number of columns, rows, sections)
Referenced by ccp4_cmap_get_dim(), ccp4_cmap_read_row(), ccp4_cmap_read_section(), ccp4_cmap_seek_row(), ccp4_cmap_set_datamode(), ccp4_cmap_set_dim(), ccp4_cmap_write_row(), ccp4_cmap_write_section(), parse_mapheader(), and write_mapheader().
int _CMMFile::origin[3] |
map origin (number of first column, row, section)
Referenced by ccp4_cmap_get_origin(), ccp4_cmap_set_origin(), parse_mapheader(), and write_mapheader().
Referenced by ccp4_cmap_get_mask(), ccp4_cmap_set_mask(), parse_mapheader(), and write_mapheader().
space group number
Referenced by ccp4_cmap_get_spacegroup(), ccp4_cmap_set_spacegroup(), parse_mapheader(), and write_mapheader().
pointer to file structure
Referenced by ccp4_cmap_close(), ccp4_cmap_get_mapstats(), ccp4_cmap_get_symop(), ccp4_cmap_open(), ccp4_cmap_read_data(), ccp4_cmap_read_row(), ccp4_cmap_read_section(), ccp4_cmap_read_section_header(), ccp4_cmap_seek_data(), ccp4_cmap_seek_row(), ccp4_cmap_seek_section(), ccp4_cmap_seek_symop(), ccp4_cmap_set_cell(), ccp4_cmap_set_datamode(), ccp4_cmap_set_dim(), ccp4_cmap_set_grid(), ccp4_cmap_set_label(), ccp4_cmap_set_local_header(), ccp4_cmap_set_mapstats(), ccp4_cmap_set_order(), ccp4_cmap_set_origin(), ccp4_cmap_set_spacegroup(), ccp4_cmap_set_symop(), ccp4_cmap_write_data(), ccp4_cmap_write_row(), ccp4_cmap_write_section(), ccp4_cmap_write_section_header(), number_sections(), parse_mapheader(), parse_maplabels(), write_mapheader(), and write_maplabels().
char _CMMFile::user_access[28] |
Referenced by parse_mapheader(), and write_mapheader().