absorbing.msm |
Transient and absorbing states |
aneur |
Aortic aneurysm progression data |
boot.msm |
Bootstrap resampling for multi-state models |
bos |
Bronchiolitis obliterans syndrome after lung transplants |
cav |
Heart transplant monitoring data |
coef.msm |
Extract model coefficients |
contour.msm |
Explore the likelihood surface |
crudeinits.msm |
Calculate crude initial values for transition intensities |
deltamethod |
The delta method |
dmenorm |
Measurement error distributions |
dmeunif |
Measurement error distributions |
dpexp |
Exponential distribution with piecewise-constant rate |
dtnorm |
Truncated Normal distribution |
ematrix.msm |
Misclassification probability matrix |
fev |
FEV1 measurements from lung transplant recipients |
hazard.msm |
Calculate tables of hazard ratios for covariates on transition intensities |
hmm-dists |
Hidden Markov model constructors |
hmmBeta |
Hidden Markov model constructors |
hmmBinom |
Hidden Markov model constructors |
hmmCat |
Hidden Markov model constructors |
hmmExp |
Hidden Markov model constructors |
hmmGamma |
Hidden Markov model constructors |
hmmIdent |
Hidden Markov model constructors |
hmmLNorm |
Hidden Markov model constructors |
hmmMETNorm |
Hidden Markov model constructors |
hmmMEUnif |
Hidden Markov model constructors |
hmmNBinom |
Hidden Markov model constructors |
hmmNorm |
Hidden Markov model constructors |
hmmPois |
Hidden Markov model constructors |
hmmTNorm |
Hidden Markov model constructors |
hmmUnif |
Hidden Markov model constructors |
hmmWeibull |
Hidden Markov model constructors |
image.msm |
Explore the likelihood surface |
logLik.msm |
Extract model log-likelihood |
lrtest.msm |
Likelihood ratio test |
MatrixExp |
Matrix exponential |
medists |
Measurement error distributions |
msm |
Multi-state Markov and hidden Markov models in continuous time |
odds.msm |
Calculate tables of odds ratios for covariates on misclassification probabilities |
pearson.msm |
Pearson-type goodness-of-fit test |
persp.msm |
Explore the likelihood surface |
pexp |
Exponential distribution with piecewise-constant rate |
plot.msm |
Plots of multi-state models |
plot.prevalence.msm |
Plot of observed and expected prevalences |
plot.survfit.msm |
Plot empirical and fitted survival curves |
plotprog.msm |
Kaplan Meier estimates of incidence |
pmatrix.msm |
Transition probability matrix |
pmatrix.piecewise.msm |
Transition probability matrix for processes with piecewise-constant intensities |
pmenorm |
Measurement error distributions |
pmeunif |
Measurement error distributions |
pnext.msm |
Probability of each state being next |
ppexp |
Exponential distribution with piecewise-constant rate |
prevalence.msm |
Tables of observed and expected prevalences |
print.summary.msm |
Summarise a fitted multi-state model |
psor |
Psoriatic arthritis data |
ptnorm |
Truncated Normal distribution |
qmatrix.msm |
Transition intensity matrix |
qmenorm |
Measurement error distributions |
qmeunif |
Measurement error distributions |
qpexp |
Exponential distribution with piecewise-constant rate |
qratio.msm |
Estimated ratio of transition intensities |
qtnorm |
Truncated Normal distribution |
rmenorm |
Measurement error distributions |
rmeunif |
Measurement error distributions |
rpexp |
Exponential distribution with piecewise-constant rate |
rtnorm |
Truncated Normal distribution |
scoreresid.msm |
Score residuals |
sim.msm |
Simulate one individual trajectory from a continuous-time Markov model |
simmulti.msm |
Simulate multiple trajectories from a multi-state Markov model with arbitrary observation times |
sojourn.msm |
Mean sojourn times from a multi-state model |
statetable.msm |
Table of transitions |
summary.msm |
Summarise a fitted multi-state model |
surface.msm |
Explore the likelihood surface |
tnorm |
Truncated Normal distribution |
totlos.msm |
Total length of stay |
transient.msm |
Transient and absorbing states |
viterbi.msm |
Calculate the most likely path through underlying states |