fslpy
2.7.0
fslpy
fsl
Contributing to
fslpy
fslpy
release history
fslpy
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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O
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P
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Q
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R
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U
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V
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W
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X
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__call__() (fsl.utils.memoize.Instanceify method)
(fsl.utils.memoize.Memoize method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
(fsl.wrappers.wrapperutils._FileOrThing method)
__contains__() (fsl.utils.cache.Cache method)
__del__() (fsl.data.featdesign.VoxelwiseEVMixin method)
(fsl.data.featimage.FEATImage method)
(fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
__dict__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.utils.bids.BIDSFile attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleLoop attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
__eq__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.utils.filetree.query.Match method)
__ge__() (fsl.utils.filetree.query.Match method)
__get__() (fsl.utils.idle.MutexFactory method)
(fsl.utils.memoize.Instanceify method)
__getitem__() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.utils.cache.Cache method)
__gt__() (fsl.utils.filetree.query.Match method)
__hash__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.utils.filetree.query.Match attribute)
__hash__() (fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
__init__() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.data.atlases.AtlasRegistry method)
(fsl.data.atlases.LabelAtlas method)
(fsl.data.atlases.StatisticAtlas method)
(fsl.data.bitmap.Bitmap method)
(fsl.data.dicom.DicomImage method)
(fsl.data.dtifit.DTIFitTensor method)
(fsl.data.featdesign.ConfoundEV method)
(fsl.data.featdesign.EV method)
(fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featdesign.MotionParameterEV method)
(fsl.data.featdesign.NormalEV method)
(fsl.data.featdesign.VoxelwiseConfoundEV method)
(fsl.data.featdesign.VoxelwiseEV method)
(fsl.data.featdesign.VoxelwiseEVMixin method)
(fsl.data.featimage.FEATImage method)
(fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.image.Image method)
(fsl.data.image.Nifti method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.data.melodicimage.MelodicImage method)
(fsl.data.mesh.Mesh method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
(fsl.data.vtk.VTKMesh method)
(fsl.transform.nonlinear.CoefficientField method)
(fsl.transform.nonlinear.DeformationField method)
(fsl.transform.nonlinear.NonLinearTransform method)
(fsl.utils.bids.BIDSFile method)
(fsl.utils.cache.Cache method)
(fsl.utils.cache.CacheItem method)
(fsl.utils.filetree.filetree.FileTree method)
(fsl.utils.filetree.query.FileTreeQuery method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.idle.IdleLoop method)
(fsl.utils.idle.IdleTask method)
(fsl.utils.idle.MutexFactory method)
(fsl.utils.idle.Task method)
(fsl.utils.idle.TaskThread method)
(fsl.utils.memoize.Instanceify method)
(fsl.utils.memoize.Memoize method)
(fsl.utils.notifier._Listener method)
(fsl.utils.platform.Platform method)
(fsl.utils.settings.Settings method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
(fsl.wrappers.fslmaths.fslmaths method)
(fsl.wrappers.wrapperutils._FileOrThing method)
(fsl.wrappers.wrapperutils._FileOrThing._Results method)
__le__() (fsl.utils.filetree.query.Match method)
__len__() (fsl.utils.cache.Cache method)
__lt__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.utils.filetree.query.Match method)
__module__ (fsl.data.atlases.Atlas attribute)
(fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.atlases.AtlasRegistry attribute)
(fsl.data.atlases.LabelAtlas attribute)
(fsl.data.atlases.MaskError attribute)
(fsl.data.atlases.ProbabilisticAtlas attribute)
(fsl.data.atlases.StatisticAtlas attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.dicom.DicomImage attribute)
(fsl.data.dtifit.DTIFitTensor attribute)
(fsl.data.featdesign.BasisFunctionEV attribute)
(fsl.data.featdesign.ConfoundEV attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.FSFError attribute)
(fsl.data.featdesign.MotionParameterEV attribute)
(fsl.data.featdesign.NormalEV attribute)
(fsl.data.featdesign.TemporalDerivativeEV attribute)
(fsl.data.featdesign.VoxelwiseConfoundEV attribute)
(fsl.data.featdesign.VoxelwiseEV attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.data.featimage.FEATImage attribute)
(fsl.data.fixlabels.InvalidLabelFileError attribute)
(fsl.data.freesurfer.FreesurferMesh attribute)
(fsl.data.gifti.GiftiMesh attribute)
(fsl.data.image.Image attribute)
(fsl.data.image.Nifti attribute)
(fsl.data.image.PathError attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
(fsl.data.melodicimage.MelodicImage attribute)
(fsl.data.mesh.Mesh attribute)
(fsl.data.mghimage.MGHImage attribute)
(fsl.data.volumelabels.VolumeLabels attribute)
(fsl.data.vtk.VTKMesh attribute)
(fsl.scripts.atlasq.HelpFormatter attribute)
(fsl.scripts.atlasq.IdentifyError attribute)
(fsl.transform.nonlinear.CoefficientField attribute)
(fsl.transform.nonlinear.DeformationField attribute)
(fsl.transform.nonlinear.NonLinearTransform attribute)
(fsl.transform.x5.X5Error attribute)
(fsl.utils.bids.BIDSFile attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.cache.Expired attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.filetree.MissingVariable attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleLoop attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.idle.TaskThread attribute)
(fsl.utils.idle.TaskThreadVeto attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier.Registered attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.path.PathError attribute)
(fsl.utils.platform.Platform attribute)
(fsl.utils.run.FSLNotPresent attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
__neq__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
__new__() (fsl.data.mesh.Mesh static method)
(fsl.utils.meta.Meta static method)
(fsl.utils.notifier.Notifier static method)
__repr__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
(fsl.data.mesh.Mesh method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.notifier._Listener method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
__setitem__() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.utils.cache.Cache method)
__str__() (fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
(fsl.data.mesh.Mesh method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.notifier._Listener method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
__weakref__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.atlases.MaskError attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.FSFError attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.data.fixlabels.InvalidLabelFileError attribute)
(fsl.data.image.PathError attribute)
(fsl.scripts.atlasq.IdentifyError attribute)
(fsl.transform.x5.X5Error attribute)
(fsl.utils.bids.BIDSFile attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.cache.Expired attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.filetree.MissingVariable attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleLoop attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.idle.TaskThreadVeto attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier.Registered attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.path.PathError attribute)
(fsl.utils.run.FSLNotPresent attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
_AtlasRegistry__getKnownAtlases() (fsl.data.atlases.AtlasRegistry method)
_AtlasRegistry__saveKnownAtlases() (fsl.data.atlases.AtlasRegistry method)
_buildMessageFormat() (in module fsl.utils.deprecated)
_buildWarningSourceIdentity() (in module fsl.utils.deprecated)
_Cache__parseDefault() (fsl.utils.cache.Cache method)
_canDisable() (in module fsl.utils.assertions)
_CONFIG_ID (in module fsl.utils.settings)
_DISABLE_ASSERTIONS (in module fsl.utils.assertions)
_dryrun() (in module fsl.utils.run)
_FileOrThing (class in fsl.wrappers.wrapperutils)
_FileOrThing._Results (class in fsl.wrappers.wrapperutils)
_FileOrThing__generateResult() (fsl.wrappers.wrapperutils._FileOrThing method)
_FileOrThing__prepareArgs() (fsl.wrappers.wrapperutils._FileOrThing method)
_fillPoints() (in module fsl.transform.affine)
_flatten_job_ids() (in module fsl.utils.fslsub)
_format_usage() (fsl.scripts.atlasq.HelpFormatter method)
_forwardStream() (in module fsl.utils.run)
_fslmaths__run() (fsl.wrappers.fslmaths.fslmaths method)
_get_template_tree() (fsl.utils.filetree.filetree.FileTree method)
_IdleLoop__idleLoop() (fsl.utils.idle.IdleLoop method)
_Image__dataRangeChanged() (fsl.data.image.Image method)
_Image__headerChanged() (fsl.data.image.Image method)
_ImageWrapper__expandCoverage() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__getData() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__imageIsCovered() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__updateDataRangeOnRead() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__updateDataRangeOnWrite() (fsl.data.imagewrapper.ImageWrapper method)
_Listener (class in fsl.utils.notifier)
_Memoize__makeKey() (fsl.utils.memoize.Memoize method)
_Memoize__setFunction() (fsl.utils.memoize.Memoize method)
_normaliseBounds() (in module fsl.utils.image.roi)
_Notifier__getListeners() (fsl.utils.notifier.Notifier method)
_readAffine() (in module fsl.transform.x5)
_readDeformation() (in module fsl.transform.x5)
_readFnirtCoefficientField() (in module fsl.transform.fnirt)
_readFnirtDeformationField() (in module fsl.transform.fnirt)
_readMetadata() (in module fsl.transform.x5)
_readSpace() (in module fsl.transform.x5)
_realrun() (in module fsl.utils.run)
_Settings__fixPath() (fsl.utils.settings.Settings method)
_Settings__getConfigDir() (fsl.utils.settings.Settings method)
_Settings__readConfigFile() (fsl.utils.settings.Settings method)
_unwrap() (in module fsl.wrappers.wrapperutils)
_update_wrapper() (in module fsl.wrappers.wrapperutils)
_warned_cache (in module fsl.utils.deprecated)
_WeakFunctionRef__findPrivateMethod() (fsl.utils.weakfuncref.WeakFunctionRef method)
_WeakFunctionRef__isMethod() (fsl.utils.weakfuncref.WeakFunctionRef method)
_writeAffine() (in module fsl.transform.x5)
_writeDeformation() (in module fsl.transform.x5)
_writeMetadata() (in module fsl.transform.x5)
_writeSpace() (in module fsl.transform.x5)
A
abs() (fsl.wrappers.fslmaths.fslmaths method)
absolute (fsl.transform.nonlinear.DeformationField attribute)
add() (fsl.wrappers.fslmaths.fslmaths method)
addAtlas() (fsl.data.atlases.AtlasRegistry method)
addComponent() (fsl.data.volumelabels.VolumeLabels method)
addExt() (in module fsl.data.image)
(in module fsl.utils.path)
addLabel() (fsl.data.volumelabels.VolumeLabels method)
addVertexData() (fsl.data.mesh.Mesh method)
addVertices() (fsl.data.mesh.Mesh method)
adjustCoverage() (in module fsl.data.imagewrapper)
all_variables (fsl.utils.filetree.filetree.FileTree attribute)
allFiles() (in module fsl.utils.path)
ALLOWED_EXTENSIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
allowErrors (fsl.utils.idle.IdleLoop attribute)
allVariables() (in module fsl.utils.filetree.query)
applyArgStyle() (in module fsl.wrappers.wrapperutils)
applyDeformation() (in module fsl.transform.nonlinear)
applyLinear() (in module fsl.scripts.fsl_apply_x5)
applyNonlinear() (in module fsl.scripts.fsl_apply_x5)
applySmoothing() (in module fsl.utils.image.resample)
applytopup() (in module fsl.wrappers.eddy)
applywarp() (in module fsl.wrappers.fnirt)
applyxfm() (in module fsl.wrappers.flirt)
asDeformationField() (fsl.transform.nonlinear.CoefficientField method)
asImage() (fsl.data.bitmap.Bitmap method)
assertFileExists() (in module fsl.utils.assertions)
assertIsFuncGifti() (in module fsl.utils.assertions)
assertIsMelodicDir() (in module fsl.utils.assertions)
assertIsNifti() (in module fsl.utils.assertions)
assertIsNifti3D() (in module fsl.utils.assertions)
assertIsNifti4D() (in module fsl.utils.assertions)
assertIsSurfGifti() (in module fsl.utils.assertions)
assertNiftiShape() (in module fsl.utils.assertions)
Atlas (class in fsl.data.atlases)
Atlas() (in module fsl.utils.parse_data)
AtlasDescription (class in fsl.data.atlases)
AtlasLabel (class in fsl.data.atlases)
atlasOrDesc() (in module fsl.scripts.atlasq)
atlasquery_emulation() (in module fsl.scripts.atlasq)
AtlasRegistry (class in fsl.data.atlases)
axes() (fsl.utils.filetree.query.FileTreeQuery method)
axisAnglesToRotMat() (in module fsl.transform.affine)
axisBounds() (in module fsl.transform.affine)
axisMapping() (fsl.data.image.Nifti method)
B
BasisFunctionEV (class in fsl.data.featdesign)
bet() (in module fsl.wrappers.bet)
BIDSFile (class in fsl.utils.bids)
bin() (fsl.wrappers.fslmaths.fslmaths method)
binv() (fsl.wrappers.fslmaths.fslmaths method)
Bitmap (class in fsl.data.bitmap)
BITMAP_DESCRIPTIONS (in module fsl.data.bitmap)
BITMAP_EXTENSIONS (in module fsl.data.bitmap)
block() (in module fsl.utils.idle)
bounds (fsl.data.mesh.Mesh attribute)
bptf() (fsl.wrappers.fslmaths.fslmaths method)
C
Cache (class in fsl.utils.cache)
CacheItem (class in fsl.utils.cache)
calcExpansion() (in module fsl.data.imagewrapper)
calcFaceNormals() (in module fsl.data.mesh)
calcRange() (fsl.data.image.Image method)
calculateMatrix() (in module fsl.utils.image.resample)
calcVertexNormals() (in module fsl.data.mesh)
callback (fsl.utils.notifier._Listener attribute)
callRate (fsl.utils.idle.IdleLoop attribute)
cancelIdle() (fsl.utils.idle.IdleLoop method)
(in module fsl.utils.idle)
canHaveGui (fsl.utils.platform.Platform attribute)
canonicalShape() (in module fsl.data.image)
canonicalSliceObj() (in module fsl.data.imagewrapper)
check_forbidden_characters() (in module fsl.utils.filetree.parse)
clear() (fsl.data.volumelabels.VolumeLabels method)
(fsl.utils.cache.Cache method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
clearComponents() (fsl.data.volumelabels.VolumeLabels method)
clearLabels() (fsl.data.volumelabels.VolumeLabels method)
clearVertexData() (fsl.data.mesh.Mesh method)
cluster() (in module fsl.wrappers.misc)
clusterResults() (fsl.data.featimage.FEATImage method)
cmdwrapper() (in module fsl.wrappers.wrapperutils)
CoefficientField (class in fsl.transform.nonlinear)
coefficientFieldToDeformationField() (in module fsl.transform.nonlinear)
collapseExpansions() (in module fsl.data.imagewrapper)
commonBase() (in module fsl.utils.path)
compareVersions() (in module fsl.data.dicom)
(in module fsl.version)
componentsToEigendecomposition() (in module fsl.data.dtifit)
componentsToTensor() (in module fsl.data.dtifit)
compose() (in module fsl.transform.affine)
concat() (in module fsl.transform.affine)
concatxfm() (in module fsl.wrappers.flirt)
configDir (fsl.utils.settings.Settings attribute)
configID (fsl.utils.settings.Settings attribute)
ConfoundEV (class in fsl.data.featdesign)
contrastNames() (fsl.data.featimage.FEATImage method)
contrasts() (fsl.data.featimage.FEATImage method)
convertDeformationSpace() (in module fsl.transform.nonlinear)
convertDeformationType() (in module fsl.transform.nonlinear)
convertwarp() (in module fsl.wrappers.fnirt)
coordLabel() (fsl.data.atlases.LabelAtlas method)
coordProportions() (fsl.data.atlases.StatisticAtlas method)
coordQuery() (in module fsl.scripts.atlasq)
coordValues() (fsl.data.atlases.StatisticAtlas method)
CORE_GEOMETRY_DESCRIPTIONS (in module fsl.data.freesurfer)
CORE_GEOMETRY_FILES (in module fsl.data.freesurfer)
coverage() (fsl.data.imagewrapper.ImageWrapper method)
covered (fsl.data.imagewrapper.ImageWrapper attribute)
CRC_DCM2NIIX_VERSION (in module fsl.data.dicom)
createLock (fsl.utils.idle.MutexFactory attribute)
D
data (fsl.data.bitmap.Bitmap attribute)
(fsl.data.image.Image attribute)
dataRange (fsl.data.image.Image attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
dataSource (fsl.data.bitmap.Bitmap attribute)
(fsl.data.image.Image attribute)
(fsl.data.mesh.Mesh attribute)
decompose() (in module fsl.transform.affine)
decomposeTensorMatrix() (in module fsl.data.dtifit)
deepest() (in module fsl.utils.path)
DEFAULT_TOPIC (in module fsl.utils.notifier)
defaultExt() (in module fsl.data.image)
defines() (fsl.utils.filetree.filetree.FileTree method)
DeformationField (class in fsl.transform.nonlinear)
deformationType (fsl.transform.nonlinear.DeformationField attribute)
delete() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deleteFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deprecated() (in module fsl.utils.deprecated)
dequeue() (fsl.utils.idle.TaskThread method)
deregister() (fsl.utils.notifier.Notifier method)
detectDeformationType() (in module fsl.transform.nonlinear)
determineAffine() (fsl.data.image.Nifti static method)
determineShape() (fsl.data.image.Nifti static method)
dicomDir (fsl.data.dicom.DicomImage attribute)
DicomImage (class in fsl.data.dicom)
dilF() (fsl.wrappers.fslmaths.fslmaths method)
dilM() (fsl.wrappers.fslmaths.fslmaths method)
disable() (fsl.utils.notifier.Notifier method)
disableAll() (fsl.utils.notifier.Notifier method)
disabled() (in module fsl.utils.assertions)
displacements() (fsl.transform.nonlinear.CoefficientField method)
div() (fsl.wrappers.fslmaths.fslmaths method)
doFlirt() (in module fsl.scripts.fsl_convert_x5)
doFnirt() (in module fsl.scripts.fsl_convert_x5)
DRY_RUN (in module fsl.utils.run)
dryrun() (in module fsl.utils.run)
DTIFitTensor (class in fsl.data.dtifit)
dtype (fsl.data.image.Image attribute)
E
eddy_cuda() (in module fsl.wrappers.eddy)
eigendecompositionToComponents() (in module fsl.data.dtifit)
eigendecompositionToTensor() (in module fsl.data.dtifit)
enable() (fsl.utils.notifier.Notifier method)
enableAll() (fsl.utils.notifier.Notifier method)
enabled() (in module fsl.data.dicom)
enqueue() (fsl.utils.idle.TaskThread method)
ensureIsImage() (in module fsl.utils.ensure)
ero() (fsl.wrappers.fslmaths.fslmaths method)
EV (class in fsl.data.featdesign)
evNames() (fsl.data.featimage.FEATImage method)
expectedShape() (in module fsl.data.imagewrapper)
Expired
EXTENSION_DESCRIPTIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
EXTRA_GEOMETRY_FILES (in module fsl.data.freesurfer)
extra_tree_dirs() (in module fsl.utils.filetree.parse)
extract_variables() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
F
fast() (in module fsl.wrappers.fast)
FEATFSFDesign (class in fsl.data.featdesign)
FEATImage (class in fsl.data.featimage)
fieldToRefMat (fsl.transform.nonlinear.CoefficientField attribute)
fieldType (fsl.transform.nonlinear.CoefficientField attribute)
FILE_GROUPS (in module fsl.data.image)
filename (fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.utils.filetree.query.Match attribute)
fileOrArray() (in module fsl.wrappers.wrapperutils)
fileOrImage() (in module fsl.wrappers.wrapperutils)
fileOrText() (in module fsl.wrappers.wrapperutils)
filePath() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
FileTree (class in fsl.utils.filetree.filetree)
FileTreeQuery (class in fsl.utils.filetree.query)
fill_known() (in module fsl.utils.filetree.utils)
fillh() (fsl.wrappers.fslmaths.fslmaths method)
find() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
find_variables() (in module fsl.utils.filetree.utils)
findReferenceImage() (in module fsl.data.freesurfer)
(in module fsl.data.vtk)
fit() (fsl.data.featimage.FEATImage method)
fixExt() (in module fsl.data.image)
flirt() (in module fsl.wrappers.flirt)
flirtMatrixToSform() (in module fsl.transform.flirt)
flirtToX5() (in module fsl.scripts.fsl_convert_x5)
floatlist() (in module fsl.scripts.resample_image)
fnirt() (in module fsl.wrappers.fnirt)
fnirtToX5() (in module fsl.scripts.fsl_convert_x5)
FreesurferMesh (class in fsl.data.freesurfer)
fromFlirt() (in module fsl.transform.flirt)
fromFnirt() (in module fsl.transform.fnirt)
frozen (fsl.utils.platform.Platform attribute)
FSFError
fsl (module)
fsl.data (module)
fsl.data.atlases (module)
fsl.data.bitmap (module)
fsl.data.constants (module)
fsl.data.dicom (module)
fsl.data.dtifit (module)
fsl.data.featanalysis (module)
fsl.data.featdesign (module)
fsl.data.featimage (module)
fsl.data.fixlabels (module)
fsl.data.freesurfer (module)
fsl.data.gifti (module)
fsl.data.image (module)
fsl.data.imagewrapper (module)
fsl.data.melodicanalysis (module)
fsl.data.melodicimage (module)
fsl.data.mesh (module)
fsl.data.mghimage (module)
fsl.data.utils (module)
fsl.data.vest (module)
fsl.data.volumelabels (module)
fsl.data.vtk (module)
fsl.scripts (module)
fsl.scripts.atlasq (module)
fsl.scripts.fsl_apply_x5 (module)
fsl.scripts.fsl_convert_x5 (module)
fsl.scripts.fsl_ents (module)
fsl.scripts.imcp (module)
fsl.scripts.imglob (module)
fsl.scripts.immv (module)
fsl.scripts.resample_image (module)
fsl.transform (module)
fsl.transform.affine (module)
fsl.transform.flirt (module)
fsl.transform.fnirt (module)
fsl.transform.nonlinear (module)
fsl.transform.x5 (module)
fsl.utils (module)
fsl.utils.assertions (module)
fsl.utils.bids (module)
fsl.utils.cache (module)
fsl.utils.deprecated (module)
fsl.utils.ensure (module)
fsl.utils.filetree (module)
fsl.utils.filetree.filetree (module)
fsl.utils.filetree.parse (module)
fsl.utils.filetree.query (module)
fsl.utils.filetree.utils (module)
fsl.utils.fslsub (module)
fsl.utils.idle (module)
fsl.utils.image (module)
fsl.utils.image.resample (module)
fsl.utils.image.roi (module)
fsl.utils.imcp (module)
fsl.utils.memoize (module)
fsl.utils.meta (module)
fsl.utils.naninfrange (module)
fsl.utils.notifier (module)
fsl.utils.parse_data (module)
fsl.utils.path (module)
fsl.utils.platform (module)
fsl.utils.run (module)
fsl.utils.settings (module)
fsl.utils.tempdir (module)
fsl.utils.weakfuncref (module)
fsl.version (module)
fsl.wrappers (module)
fsl.wrappers.bet (module)
fsl.wrappers.eddy (module)
fsl.wrappers.fast (module)
fsl.wrappers.flirt (module)
fsl.wrappers.fnirt (module)
fsl.wrappers.fsl_anat (module)
fsl.wrappers.fslmaths (module)
fsl.wrappers.fugue (module)
fsl.wrappers.melodic (module)
fsl.wrappers.misc (module)
fsl.wrappers.wrapperutils (module)
fsl_anat() (in module fsl.wrappers.fsl_anat)
FSL_PREFIX (in module fsl.utils.run)
fsl_regfilt() (in module fsl.wrappers.melodic)
fsldevdir (fsl.utils.platform.Platform attribute)
fsldir (fsl.utils.platform.Platform attribute)
fslmaths (class in fsl.wrappers.fslmaths)
FSLNotPresent
fslreorient2std() (in module fsl.wrappers.misc)
fslroi() (in module fsl.wrappers.misc)
fslVersion (fsl.utils.platform.Platform attribute)
fslwrapper() (in module fsl.wrappers.wrapperutils)
fugue() (in module fsl.wrappers.fugue)
full_name (fsl.utils.filetree.query.Match attribute)
func_to_cmd() (in module fsl.utils.fslsub)
function() (fsl.utils.weakfuncref.WeakFunctionRef method)
G
genComponentIndexList() (in module fsl.scripts.fsl_ents)
generateAffines() (fsl.data.image.Nifti static method)
get() (fsl.data.atlases.LabelAtlas method)
(fsl.data.atlases.StatisticAtlas method)
(fsl.utils.cache.Cache method)
(fsl.utils.filetree.filetree.FileTree method)
get_all() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
get_all_trees() (fsl.utils.filetree.filetree.FileTree method)
get_all_vars() (fsl.utils.filetree.filetree.FileTree method)
get_registered() (in module fsl.utils.filetree.filetree)
get_template() (fsl.utils.filetree.filetree.FileTree method)
get_variable() (fsl.utils.filetree.filetree.FileTree method)
getAffine() (fsl.data.image.Nifti method)
getAllLabels() (fsl.data.volumelabels.VolumeLabels method)
getAnalysisDir() (in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getAnalysisName() (fsl.data.featimage.FEATImage method)
getAtlasDescription() (fsl.data.atlases.AtlasRegistry method)
getClusterMask() (fsl.data.featimage.FEATImage method)
getClusterMaskFile() (in module fsl.data.featanalysis)
getComponentPowerSpectra() (in module fsl.data.melodicanalysis)
getComponentPowerSpectrum() (fsl.data.melodicimage.MelodicImage method)
getComponents() (fsl.data.volumelabels.VolumeLabels method)
getComponentTimeSeries() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getCOPE() (fsl.data.featimage.FEATImage method)
getCOPEFile() (in module fsl.data.featanalysis)
getData() (fsl.data.featdesign.VoxelwiseEVMixin method)
getDataFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getDesign() (fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featimage.FEATImage method)
getDisplayLabel() (fsl.data.volumelabels.VolumeLabels method)
getDTIFitDataPrefix() (in module fsl.data.dtifit)
getEVs() (fsl.data.featdesign.FEATFSFDesign method)
getExt() (in module fsl.data.image)
(in module fsl.utils.path)
getFEATDir() (fsl.data.featimage.FEATImage method)
getFileGroup() (in module fsl.utils.path)
getFirstLevelEVs() (in module fsl.data.featdesign)
getFIRSTPrefix() (in module fsl.data.vtk)
getFTMixFile() (in module fsl.data.melodicanalysis)
getHigherLevelEVs() (in module fsl.data.featdesign)
getICFile() (in module fsl.data.melodicanalysis)
getIdleTimeout() (in module fsl.utils.idle)
getImageWrapper() (fsl.data.image.Image method)
getLabels() (fsl.data.volumelabels.VolumeLabels method)
getMeanFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getMelodicDir() (fsl.data.melodicimage.MelodicImage method)
getMelodicFile() (in module fsl.data.featanalysis)
getMeta() (fsl.utils.meta.Meta method)
getMixFile() (in module fsl.data.melodicanalysis)
getNumComponents() (in module fsl.data.melodicanalysis)
getOrientation() (fsl.data.image.Nifti method)
getPE() (fsl.data.featimage.FEATImage method)
getPEFile() (in module fsl.data.featanalysis)
getReportFile() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getResidualFile() (in module fsl.data.featanalysis)
getResiduals() (fsl.data.featimage.FEATImage method)
getTaskThread() (fsl.data.imagewrapper.ImageWrapper method)
getThresholds() (in module fsl.data.featanalysis)
getTopLevelAnalysisDir() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getVertexData() (fsl.data.mesh.Mesh method)
getVertexDataColourTable() (fsl.data.freesurfer.FreesurferMesh method)
getXFormCode() (fsl.data.image.Nifti method)
getZStatFile() (in module fsl.data.featanalysis)
getZStats() (fsl.data.featimage.FEATImage method)
GiftiMesh (class in fsl.data.gifti)
glIsSoftwareRenderer (fsl.utils.platform.Platform attribute)
glRenderer (fsl.utils.platform.Platform attribute)
glVersion (fsl.utils.platform.Platform attribute)
guessType() (in module fsl.data.utils)
H
hasAtlas() (fsl.data.atlases.AtlasRegistry method)
hasComponent() (fsl.data.volumelabels.VolumeLabels method)
hasExt() (in module fsl.utils.path)
hasLabel() (fsl.data.volumelabels.VolumeLabels method)
hasMelodicDir() (in module fsl.data.featanalysis)
hasStats() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
haveGui (fsl.utils.platform.Platform attribute)
HelpFormatter (class in fsl.scripts.atlasq)
HIDE_IF_TRUE (in module fsl.wrappers.wrapperutils)
I
identifyAffine() (fsl.data.image.Nifti static method)
identifyAtlas() (in module fsl.scripts.atlasq)
IdentifyError
idle() (fsl.utils.idle.IdleLoop method)
(in module fsl.utils.idle)
IdleLoop (class in fsl.utils.idle)
idleLoop (in module fsl.utils.idle)
idleReset() (in module fsl.utils.idle)
IdleTask (class in fsl.utils.idle)
idleWhen() (fsl.utils.idle.IdleLoop method)
(in module fsl.utils.idle)
Image (class in fsl.data.image)
image (fsl.data.featdesign.VoxelwiseEVMixin attribute)
Image() (in module fsl.utils.parse_data)
ImageOut() (in module fsl.utils.parse_data)
ImageWrapper (class in fsl.data.imagewrapper)
imcp() (in module fsl.utils.imcp)
imglob() (in module fsl.scripts.imglob)
immv() (in module fsl.utils.imcp)
inBIDSDir() (in module fsl.utils.bids)
indices (fsl.data.mesh.Mesh attribute)
inferType() (in module fsl.transform.x5)
info() (in module fsl.utils.fslsub)
inIdle() (fsl.utils.idle.IdleLoop method)
(in module fsl.utils.idle)
initialise() (in module fsl.utils.settings)
inm() (fsl.wrappers.fslmaths.fslmaths method)
inSSHSession (fsl.utils.platform.Platform attribute)
Instanceify (class in fsl.utils.memoize)
intent (fsl.data.image.Nifti attribute)
intlist() (in module fsl.scripts.resample_image)
invalidate() (fsl.utils.memoize.Memoize method)
InvalidLabelFileError
invert() (in module fsl.transform.affine)
inVNCSession (fsl.utils.platform.Platform attribute)
invwarp() (in module fsl.wrappers.fnirt)
invxfm() (in module fsl.wrappers.flirt)
isAllEnabled() (fsl.utils.notifier.Notifier method)
isBIDSDir() (in module fsl.utils.bids)
isBIDSFile() (in module fsl.utils.bids)
iscomplex (fsl.data.image.Image attribute)
isDTIFitPath() (in module fsl.data.dtifit)
isEnabled() (fsl.utils.notifier.Notifier method)
isFEATDir() (in module fsl.data.featanalysis)
isFEATImage() (in module fsl.data.featanalysis)
isFirstLevelAnalysis() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
isMelodicDir() (in module fsl.data.melodicanalysis)
isMelodicImage() (in module fsl.data.melodicanalysis)
isNeurological() (fsl.data.image.Nifti method)
isNoisyComponent() (in module fsl.data.fixlabels)
isQueued() (fsl.utils.idle.TaskThread method)
isValidFancySliceObj() (in module fsl.data.imagewrapper)
K
knotSpacing (fsl.transform.nonlinear.CoefficientField attribute)
L
L1() (fsl.data.dtifit.DTIFitTensor method)
L2() (fsl.data.dtifit.DTIFitTensor method)
L3() (fsl.data.dtifit.DTIFitTensor method)
label() (fsl.data.atlases.LabelAtlas method)
LabelAtlas (class in fsl.data.atlases)
labelNames() (in module fsl.scripts.atlasq)
list_all_trees() (in module fsl.utils.filetree.parse)
listAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.scripts.atlasq)
listFiles() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
LOAD (in module fsl.wrappers.wrapperutils)
load() (fsl.data.volumelabels.VolumeLabels method)
load_pickle() (fsl.utils.filetree.filetree.FileTree class method)
loadAtlas() (fsl.data.atlases.AtlasRegistry method)
loadClusterResults() (in module fsl.data.featanalysis)
loadConfoundFiles() (in module fsl.scripts.fsl_ents)
loadContrasts() (in module fsl.data.featanalysis)
loadData() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
loadDesign() (in module fsl.data.featanalysis)
loadDesignMat() (in module fsl.data.featdesign)
loadGiftiMesh() (in module fsl.data.gifti)
loadGiftiVertexData() (in module fsl.data.gifti)
loadIndexedImageFile() (in module fsl.data.image)
loadLabelFile() (in module fsl.data.fixlabels)
loadMetadata() (in module fsl.data.image)
(in module fsl.utils.bids)
loadSeries() (in module fsl.data.dicom)
loadSettings() (in module fsl.data.featanalysis)
loadVertexData() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVertexDataFile() (in module fsl.data.freesurfer)
loadVertices() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVestLutFile() (in module fsl.data.vest)
loadVTKPolydataFile() (in module fsl.data.vtk)
looksLikeImage() (in module fsl.data.image)
looksLikeTensorImage() (in module fsl.data.dtifit)
looksLikeVestLutFile() (in module fsl.data.vest)
M
main() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_apply_x5)
(in module fsl.scripts.fsl_convert_x5)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.imcp)
(in module fsl.scripts.imglob)
(in module fsl.scripts.immv)
(in module fsl.scripts.resample_image)
makeWriteable() (in module fsl.data.utils)
mapIndices() (fsl.data.image.Nifti method)
mas() (fsl.wrappers.fslmaths.fslmaths method)
MaskError
maskLabel() (fsl.data.atlases.LabelAtlas method)
maskProportions() (fsl.data.atlases.StatisticAtlas method)
maskQuery() (in module fsl.scripts.atlasq)
maskValues() (fsl.data.atlases.StatisticAtlas method)
Match (class in fsl.utils.filetree.query)
match() (fsl.utils.bids.BIDSFile method)
mcflirt() (in module fsl.wrappers.flirt)
melodic() (in module fsl.wrappers.melodic)
MelodicImage (class in fsl.data.melodicimage)
Memoize (class in fsl.utils.memoize)
memoize() (in module fsl.utils.memoize)
memoizeMD5() (in module fsl.utils.memoize)
Mesh (class in fsl.data.mesh)
Mesh() (in module fsl.utils.parse_data)
Meta (class in fsl.utils.meta)
metaItems() (fsl.utils.meta.Meta method)
metaKeys() (fsl.utils.meta.Meta method)
metaValues() (fsl.utils.meta.Meta method)
MGHImage (class in fsl.data.mghimage)
mghImageFile (fsl.data.mghimage.MGHImage attribute)
MIN_DCM2NIIX_VERSION (in module fsl.data.dicom)
MissingVariable
modelFit() (in module fsl.data.featimage)
MotionParameterEV (class in fsl.data.featdesign)
mul() (fsl.wrappers.fslmaths.fslmaths method)
mutex() (in module fsl.utils.idle)
MutexFactory (class in fsl.utils.idle)
N
name (fsl.data.bitmap.Bitmap attribute)
(fsl.data.mesh.Mesh attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
namedPositionals() (in module fsl.wrappers.wrapperutils)
naninfrange() (in module fsl.utils.naninfrange)
ndim (fsl.data.image.Nifti attribute)
nearestVertex() (fsl.data.mesh.Mesh method)
needsFixing() (in module fsl.data.mesh)
neverQueue (fsl.utils.idle.IdleLoop attribute)
nibImage (fsl.data.image.Image attribute)
Nifti (class in fsl.data.image)
NIFTI_XFORM_ALIGNED_ANAT (in module fsl.data.constants)
NIFTI_XFORM_ANALYZE (in module fsl.data.constants)
NIFTI_XFORM_MNI_152 (in module fsl.data.constants)
NIFTI_XFORM_SCANNER_ANAT (in module fsl.data.constants)
NIFTI_XFORM_TALAIRACH (in module fsl.data.constants)
NIFTI_XFORM_UNKNOWN (in module fsl.data.constants)
niftiVersion (fsl.data.image.Nifti attribute)
NonLinearTransform (class in fsl.transform.nonlinear)
NormalEV (class in fsl.data.featdesign)
normalise() (in module fsl.transform.affine)
normals (fsl.data.mesh.Mesh attribute)
Notifier (class in fsl.utils.notifier)
notify() (fsl.utils.notifier.Notifier method)
numComponents() (fsl.data.melodicimage.MelodicImage method)
(fsl.data.volumelabels.VolumeLabels method)
numContrasts() (fsl.data.featimage.FEATImage method)
numEVs() (fsl.data.featimage.FEATImage method)
numPoints() (fsl.data.featimage.FEATImage method)
nvals (fsl.data.image.Image attribute)
nvertices (fsl.data.mesh.Mesh attribute)
O
ohi() (in module fsl.scripts.atlasq)
on_disk() (fsl.utils.filetree.filetree.FileTree method)
optional_variables() (in module fsl.utils.filetree.utils)
ORIENT_A2P (in module fsl.data.constants)
ORIENT_I2S (in module fsl.data.constants)
ORIENT_L2R (in module fsl.data.constants)
ORIENT_P2A (in module fsl.data.constants)
ORIENT_R2L (in module fsl.data.constants)
ORIENT_S2I (in module fsl.data.constants)
ORIENT_UNKNOWN (in module fsl.data.constants)
os (fsl.utils.platform.Platform attribute)
output (fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
output() (in module fsl.utils.fslsub)
OVERLAP_ALL (in module fsl.data.imagewrapper)
OVERLAP_NONE (in module fsl.data.imagewrapper)
OVERLAP_SOME (in module fsl.data.imagewrapper)
P
parent (fsl.utils.filetree.filetree.FileTree attribute)
parseArgs() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_apply_x5)
(in module fsl.scripts.fsl_convert_x5)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.resample_image)
parseFilename() (in module fsl.utils.bids)
parseVersionString() (in module fsl.version)
partialFit() (fsl.data.featimage.FEATImage method)
patchVersion() (in module fsl.version)
PathError
,
[1]
pixdim (fsl.data.image.Nifti attribute)
planeIntersection() (fsl.data.mesh.Mesh method)
Platform (class in fsl.utils.platform)
platform (in module fsl.utils.platform)
prepareArgs() (in module fsl.utils.run)
prepareGiftiVertexData() (in module fsl.data.gifti)
prepareMask() (fsl.data.atlases.Atlas method)
printColumns() (in module fsl.scripts.atlasq)
ProbabilisticAtlas (class in fsl.data.atlases)
proportions() (fsl.data.atlases.StatisticAtlas method)
put() (fsl.utils.cache.Cache method)
Q
query() (fsl.utils.filetree.query.FileTreeQuery method)
queryAtlas() (in module fsl.scripts.atlasq)
queryLongOutput() (in module fsl.scripts.atlasq)
queryShortOutput() (in module fsl.scripts.atlasq)
queue (fsl.utils.idle.IdleLoop attribute)
queueDict (fsl.utils.idle.IdleLoop attribute)
R
rayIntersection() (fsl.data.mesh.Mesh method)
read() (fsl.utils.filetree.filetree.FileTree class method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
read_line() (in module fsl.utils.filetree.parse)
read_subtree_line() (in module fsl.utils.filetree.parse)
readAll() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFlirt() (in module fsl.transform.flirt)
readFnirt() (in module fsl.transform.fnirt)
readLinearX5() (in module fsl.transform.x5)
readNonLinearX5() (in module fsl.transform.x5)
recip() (fsl.wrappers.fslmaths.fslmaths method)
ref (fsl.transform.nonlinear.NonLinearTransform attribute)
refSpace (fsl.transform.nonlinear.NonLinearTransform attribute)
refToFieldMat (fsl.transform.nonlinear.CoefficientField attribute)
refToSrcMat (fsl.transform.nonlinear.CoefficientField attribute)
register() (fsl.utils.notifier.Notifier method)
register_tree() (in module fsl.utils.filetree.filetree)
Registered
registered (fsl.utils.idle.IdleLoop attribute)
relatedFiles() (in module fsl.data.gifti)
relatedGeometryFiles() (in module fsl.data.freesurfer)
relatedVertexDataFiles() (in module fsl.data.freesurfer)
relative (fsl.transform.nonlinear.DeformationField attribute)
rem() (fsl.wrappers.fslmaths.fslmaths method)
removeAtlas() (fsl.data.atlases.AtlasRegistry method)
removeComponent() (fsl.data.volumelabels.VolumeLabels method)
removeDuplicates() (in module fsl.utils.path)
removeExt() (in module fsl.data.image)
(in module fsl.utils.path)
removeLabel() (fsl.data.volumelabels.VolumeLabels method)
resample() (fsl.data.image.Image method)
(in module fsl.utils.image.resample)
resampleToPixdims() (in module fsl.utils.image.resample)
resampleToReference() (in module fsl.utils.image.resample)
rescanAtlases() (fsl.data.atlases.AtlasRegistry method)
reset() (fsl.data.imagewrapper.ImageWrapper method)
(fsl.utils.idle.IdleLoop method)
resetWarningCache() (in module fsl.utils.deprecated)
resolve() (in module fsl.utils.filetree.utils)
resolve_optionals() (in module fsl.utils.filetree.utils)
rmsdev() (in module fsl.transform.affine)
robustfov() (in module fsl.wrappers.bet)
roi() (in module fsl.utils.image.roi)
rotMatToAffine() (in module fsl.transform.affine)
rotMatToAxisAngles() (in module fsl.transform.affine)
run() (fsl.utils.idle.TaskThread method)
(fsl.wrappers.fslmaths.fslmaths method)
(in module fsl.utils.idle)
(in module fsl.utils.run)
runfsl() (in module fsl.utils.run)
S
sameSpace() (fsl.data.image.Nifti method)
sanitiseList() (in module fsl.scripts.resample_image)
save() (fsl.data.image.Image method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
save_pickle() (fsl.utils.filetree.filetree.FileTree method)
saveLabelFile() (in module fsl.data.fixlabels)
saveState (fsl.data.image.Image attribute)
scaledVoxToVoxMat (fsl.data.image.Nifti attribute)
scaleOffsetXform() (in module fsl.transform.affine)
scan() (in module fsl.utils.filetree.query)
scanDir() (in module fsl.data.dicom)
search_tree() (in module fsl.utils.filetree.parse)
selectedVertices() (fsl.data.mesh.Mesh method)
seriesCRC() (in module fsl.data.dicom)
set() (in module fsl.utils.settings)
setIdleTimeout() (in module fsl.utils.idle)
setMeta() (fsl.utils.meta.Meta method)
Settings (class in fsl.utils.settings)
sformToFlirtMatrix() (in module fsl.transform.flirt)
shallowest() (in module fsl.utils.path)
shape (fsl.data.bitmap.Bitmap attribute)
(fsl.data.image.Nifti attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
short_name (fsl.utils.filetree.query.Match attribute)
short_names (fsl.utils.filetree.query.FileTreeQuery attribute)
SHOW_IF_TRUE (in module fsl.wrappers.wrapperutils)
sigloss() (in module fsl.wrappers.fugue)
skip() (fsl.utils.notifier.Notifier method)
skipAll() (fsl.utils.notifier.Notifier method)
skipUnchanged() (in module fsl.utils.memoize)
sliceCovered() (in module fsl.data.imagewrapper)
sliceObjToSliceTuple() (in module fsl.data.imagewrapper)
sliceOverlap() (in module fsl.data.imagewrapper)
slicer() (in module fsl.wrappers.misc)
sliceTupleToSliceObj() (in module fsl.data.imagewrapper)
splitExt() (in module fsl.data.image)
(in module fsl.utils.path)
src (fsl.transform.nonlinear.NonLinearTransform attribute)
srcSpace (fsl.transform.nonlinear.NonLinearTransform attribute)
srcToRefMat (fsl.transform.nonlinear.CoefficientField attribute)
StatisticAtlas (class in fsl.data.atlases)
stop() (fsl.utils.idle.TaskThread method)
strval() (fsl.data.image.Nifti method)
sub() (fsl.wrappers.fslmaths.fslmaths method)
submit() (in module fsl.utils.fslsub)
summariseAtlas() (in module fsl.scripts.atlasq)
surfToVoxMat (fsl.data.mghimage.MGHImage attribute)
surfToWorldMat (fsl.data.mghimage.MGHImage attribute)
synchronous() (fsl.utils.idle.IdleLoop method)
T
Task (class in fsl.utils.idle)
TaskThread (class in fsl.utils.idle)
TaskThreadVeto
tempdir() (in module fsl.utils.tempdir)
template (fsl.utils.filetree.query.Match attribute)
template_variables() (fsl.utils.filetree.filetree.FileTree method)
templates (fsl.utils.filetree.query.FileTreeQuery attribute)
TemporalDerivativeEV (class in fsl.data.featdesign)
tensorToComponents() (in module fsl.data.dtifit)
tensorToEigendecomposition() (in module fsl.data.dtifit)
thr() (fsl.wrappers.fslmaths.fslmaths method)
thresholds() (fsl.data.featimage.FEATImage method)
timer (fsl.utils.idle.IdleLoop attribute)
timeUnits (fsl.data.image.Nifti attribute)
Tmax() (fsl.wrappers.fslmaths.fslmaths method)
Tmean() (fsl.wrappers.fslmaths.fslmaths method)
Tmin() (fsl.wrappers.fslmaths.fslmaths method)
toFlirt() (in module fsl.transform.flirt)
toFnirt() (in module fsl.transform.fnirt)
topup() (in module fsl.wrappers.eddy)
tr (fsl.data.melodicimage.MelodicImage attribute)
transform() (fsl.transform.nonlinear.CoefficientField method)
(fsl.transform.nonlinear.DeformationField method)
(fsl.transform.nonlinear.NonLinearTransform method)
(in module fsl.transform.affine)
transformNormal() (in module fsl.transform.affine)
tree (fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
trimesh (fsl.data.mesh.Mesh attribute)
Tstd() (fsl.wrappers.fslmaths.fslmaths method)
U
uniquePrefix() (in module fsl.utils.path)
update() (fsl.utils.filetree.filetree.FileTree method)
updateMeta() (fsl.utils.meta.Meta method)
use() (in module fsl.utils.settings)
uthr() (fsl.wrappers.fslmaths.fslmaths method)
V
V1() (fsl.data.dtifit.DTIFitTensor method)
V2() (fsl.data.dtifit.DTIFitTensor method)
V3() (fsl.data.dtifit.DTIFitTensor method)
values() (fsl.data.atlases.StatisticAtlas method)
variables (fsl.utils.filetree.query.Match attribute)
variables() (fsl.utils.filetree.query.FileTreeQuery method)
veclength() (in module fsl.transform.affine)
VERTEX_ANNOT_FILES (in module fsl.data.freesurfer)
VERTEX_DATA_FILES (in module fsl.data.freesurfer)
VERTEX_LABEL_FILES (in module fsl.data.freesurfer)
VERTEX_MGH_FILES (in module fsl.data.freesurfer)
vertexDataSets() (fsl.data.mesh.Mesh method)
vertexSets() (fsl.data.mesh.Mesh method)
vertices (fsl.data.mesh.Mesh attribute)
vnormals (fsl.data.mesh.Mesh attribute)
VolumeLabels (class in fsl.data.volumelabels)
VoxelwiseConfoundEV (class in fsl.data.featdesign)
VoxelwiseEV (class in fsl.data.featdesign)
VoxelwiseEVMixin (class in fsl.data.featdesign)
voxToScaledVoxMat (fsl.data.image.Nifti attribute)
voxToSurfMat (fsl.data.mghimage.MGHImage attribute)
voxToWorldMat (fsl.data.image.Image attribute)
(fsl.data.image.Nifti attribute)
VTKMesh (class in fsl.data.vtk)
W
wait() (in module fsl.utils.fslsub)
(in module fsl.utils.idle)
(in module fsl.utils.run)
waitUntilIdle() (fsl.utils.idle.TaskThread method)
warn() (in module fsl.utils.deprecated)
WeakFunctionRef (class in fsl.utils.weakfuncref)
worldToSurfMat (fsl.data.mghimage.MGHImage attribute)
worldToVoxMat (fsl.data.image.Nifti attribute)
write() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeConfigFile() (fsl.utils.settings.Settings method)
writeFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeFlirt() (in module fsl.transform.flirt)
writeLinearX5() (in module fsl.transform.x5)
writeNonLinearX5() (in module fsl.transform.x5)
WX_GTK (in module fsl.utils.platform)
WX_MAC_CARBON (in module fsl.utils.platform)
WX_MAC_COCOA (in module fsl.utils.platform)
WX_PHOENIX (in module fsl.utils.platform)
WX_PYTHON (in module fsl.utils.platform)
WX_UNKNOWN (in module fsl.utils.platform)
wxFlavour (fsl.utils.platform.Platform attribute)
wxPlatform (fsl.utils.platform.Platform attribute)
X
X5Error
X5ToFlirt() (in module fsl.scripts.fsl_convert_x5)
X5ToFnirt() (in module fsl.scripts.fsl_convert_x5)
xyzUnits (fsl.data.image.Nifti attribute)