fsl.utils.parse_data
¶
This module contains support for neuroimaging data in argparse
Argparse is the built-in python library for resolving command line arguments.
The functions in this module can be passed on to the type
argument in the
ArgumentParser.add_command
method to interpret command line arguments as
neuroimaging objects (.e.g, NIFTI image files)
Image |
Reads in an image from a NIFTI or Analyze file. |
ImageOut |
Uses the FSL convention to create a complete image output filename |
Mesh |
Reads in a mesh from either a GIFTI (.surf.gii) or a VTK (.vtk) file |
Atlas |
Reads in the atlas from the FSL standard atlases |
-
fsl.utils.parse_data.
Image
(filename, *args, **kwargs)[source]¶ Reads in an image from a NIFTI or Analyze file.
Parameters: filename – filename provided by the user Returns: fsl.data.image.Image object All other arguments are passed through to the
Image
upon creation.
-
fsl.utils.parse_data.
ImageOut
(basename)[source]¶ Uses the FSL convention to create a complete image output filename
Parameters: basename – filename provided by the user Returns: filename with extension