public final class QSequenceLineMedia extends java.lang.Object implements QSequenceCachableMedia, QSequenceMediaComparer
Modifier and Type | Field and Description |
---|---|
static int |
FILE_SEGMENT_SIZE |
private QSequenceLineCache |
leftCache |
static int |
MEMORY_THRESHOLD |
private QSequenceLineCache |
rightCache |
static double |
SEARCH_DEPTH_EXPONENT |
static int |
SEGMENT_ENTRY_SIZE |
Constructor and Description |
---|
QSequenceLineMedia(QSequenceLineCache leftCache,
QSequenceLineCache rightCache) |
Modifier and Type | Method and Description |
---|---|
static QSequenceLineResult |
createBlocks(QSequenceLineRAData leftData,
QSequenceLineRAData rightData) |
static QSequenceLineResult |
createBlocks(QSequenceLineRAData leftData,
QSequenceLineRAData rightData,
int memoryThreshold,
int fileSegmentSize,
double searchDepthExponent,
QSequenceLineTempDirectoryFactory tempDirectoryFactory,
QSequenceLineSimplifier simplifier) |
static QSequenceLineResult |
createBlocks(QSequenceLineRAData leftData,
QSequenceLineRAData rightData,
QSequenceLineSimplifier simplifier) |
(package private) static QSequenceLineResult |
createBlocksInFilesystem(QSequenceLineRAData leftData,
QSequenceLineRAData rightData,
QSequenceLineTempDirectoryFactory tempDirectoryFactory,
double searchDepthExponent,
int memoryThreshold,
int fileSegmentSize,
QSequenceLineSimplifier simplifier) |
(package private) static QSequenceLineResult |
createBlocksInMemory(java.io.InputStream leftStream,
java.io.InputStream rightStream,
double searchDepthExponent,
QSequenceLineSimplifier simplifier) |
boolean |
equals(int leftIndex,
int rightIndex) |
boolean |
equalsLeft(int left1,
int left2) |
boolean |
equalsRight(int right1,
int right2) |
int |
getLeftLength() |
java.lang.Object |
getMediaLeftObject(int index) |
java.lang.Object |
getMediaRightObject(int index) |
int |
getRightLength() |
private static int |
getSearchDepth(QSequenceLineMedia lineMedia,
double searchDepthExponent) |
private static int |
parseMemoryTreshold(java.lang.String value) |
static QSequenceLineCache |
readLines(QSequenceLineRAData data) |
public static final int FILE_SEGMENT_SIZE
public static final int SEGMENT_ENTRY_SIZE
public static final int MEMORY_THRESHOLD
public static final double SEARCH_DEPTH_EXPONENT
private final QSequenceLineCache leftCache
private final QSequenceLineCache rightCache
public QSequenceLineMedia(QSequenceLineCache leftCache, QSequenceLineCache rightCache)
public static QSequenceLineCache readLines(QSequenceLineRAData data) throws java.io.IOException
java.io.IOException
public static QSequenceLineResult createBlocks(QSequenceLineRAData leftData, QSequenceLineRAData rightData) throws java.io.IOException, QSequenceException
java.io.IOException
QSequenceException
public static QSequenceLineResult createBlocks(QSequenceLineRAData leftData, QSequenceLineRAData rightData, QSequenceLineSimplifier simplifier) throws java.io.IOException, QSequenceException
java.io.IOException
QSequenceException
public static QSequenceLineResult createBlocks(QSequenceLineRAData leftData, QSequenceLineRAData rightData, int memoryThreshold, int fileSegmentSize, double searchDepthExponent, QSequenceLineTempDirectoryFactory tempDirectoryFactory, QSequenceLineSimplifier simplifier) throws java.io.IOException, QSequenceException
java.io.IOException
QSequenceException
static QSequenceLineResult createBlocksInMemory(java.io.InputStream leftStream, java.io.InputStream rightStream, double searchDepthExponent, QSequenceLineSimplifier simplifier) throws java.io.IOException, QSequenceException
java.io.IOException
QSequenceException
static QSequenceLineResult createBlocksInFilesystem(QSequenceLineRAData leftData, QSequenceLineRAData rightData, QSequenceLineTempDirectoryFactory tempDirectoryFactory, double searchDepthExponent, int memoryThreshold, int fileSegmentSize, QSequenceLineSimplifier simplifier) throws java.io.IOException, QSequenceException
java.io.IOException
QSequenceException
public int getLeftLength()
getLeftLength
in interface QSequenceMedia
public int getRightLength()
getRightLength
in interface QSequenceMedia
public java.lang.Object getMediaLeftObject(int index) throws QSequenceException
getMediaLeftObject
in interface QSequenceCachableMedia
QSequenceException
public java.lang.Object getMediaRightObject(int index) throws QSequenceException
getMediaRightObject
in interface QSequenceCachableMedia
QSequenceException
public boolean equals(int leftIndex, int rightIndex) throws QSequenceException
equals
in interface QSequenceMedia
QSequenceException
public boolean equalsLeft(int left1, int left2) throws QSequenceException
equalsLeft
in interface QSequenceMediaComparer
QSequenceException
public boolean equalsRight(int right1, int right2) throws QSequenceException
equalsRight
in interface QSequenceMediaComparer
QSequenceException
private static int getSearchDepth(QSequenceLineMedia lineMedia, double searchDepthExponent)
private static int parseMemoryTreshold(java.lang.String value)