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java.lang.Objectorg.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.simple.AlchemyReader
public class AlchemyReader
TRIPOS simple Alchemy reader. atomtypes based on OpenBabel data/types.txt Somewhat flexible - for 3DNA compatibility. See http://rutchem.rutgers.edu/~xiangjun/3DNA/jmol/3dna_bp.alc) Bob Hanson 12/2008
Field Summary | |
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private int |
atomCount
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private int |
bondCount
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Constructor Summary | |
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AlchemyReader()
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Method Summary | |
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void |
initializeReader()
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private void |
readAtoms()
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private void |
readBonds()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private int atomCount
private int bondCount
Constructor Detail |
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public AlchemyReader()
Method Detail |
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public void initializeReader() throws java.lang.Exception
initializeReader
in class AtomSetCollectionReader
java.lang.Exception
private void readAtoms() throws java.lang.Exception
java.lang.Exception
private void readBonds() throws java.lang.Exception
java.lang.Exception
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