public interface JmolBioResolver
Modifier and Type | Method and Description |
---|---|
void |
addImplicitHydrogenAtoms(JmolAdapter adapter,
int i,
int nH) |
Group |
distinguishAndPropagateGroup(Chain chain,
java.lang.String group3,
int seqcode,
int firstAtomIndex,
int maxAtomIndex,
int modelIndex,
int[] specialAtomIndexes,
Atom[] atoms) |
void |
finalizeHydrogens() |
java.lang.String |
fixPropertyValue(BS bsAtoms,
java.lang.String data) |
Model |
getBioModel(int modelIndex,
int trajectoryBaseIndex,
java.lang.String jmolData,
java.util.Properties modelProperties,
java.util.Map<java.lang.String,java.lang.Object> modelAuxiliaryInfo) |
void |
initialize(ModelLoader modelLoader) |
void |
initializeHydrogenAddition() |
void |
iterateOverAllNewStructures(JmolAdapter adapter,
java.lang.Object atomSetCollection) |
void |
setHaveHsAlready(boolean b) |
Group distinguishAndPropagateGroup(Chain chain, java.lang.String group3, int seqcode, int firstAtomIndex, int maxAtomIndex, int modelIndex, int[] specialAtomIndexes, Atom[] atoms)
void initializeHydrogenAddition()
void finalizeHydrogens()
void setHaveHsAlready(boolean b)
void addImplicitHydrogenAtoms(JmolAdapter adapter, int i, int nH)
void initialize(ModelLoader modelLoader)
java.lang.String fixPropertyValue(BS bsAtoms, java.lang.String data)
Model getBioModel(int modelIndex, int trajectoryBaseIndex, java.lang.String jmolData, java.util.Properties modelProperties, java.util.Map<java.lang.String,java.lang.Object> modelAuxiliaryInfo)
void iterateOverAllNewStructures(JmolAdapter adapter, java.lang.Object atomSetCollection)