class Pmesh4Reader extends PolygonFileReader
Modifier and Type | Field and Description |
---|---|
private int |
color |
private int |
iToken |
private int |
nPolygons |
private int |
nX |
private int |
nY |
private java.lang.String |
pmeshError |
private java.lang.String[] |
tokens |
private float |
transparency |
private java.lang.String |
type |
nTriangles, nVertices
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes
Constructor and Description |
---|
Pmesh4Reader() |
Modifier and Type | Method and Description |
---|---|
private void |
createMesh() |
private float |
getFloat() |
private int |
getInt() |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
private java.lang.String |
nextToken() |
private void |
readColor() |
private boolean |
readVertices() |
private boolean |
readVerticesAndPolygons() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameters
closeReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo
addTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlane2, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles
private int nPolygons
private java.lang.String pmeshError
private java.lang.String type
private int color
private float transparency
private int nX
private int nY
private java.lang.String[] tokens
private int iToken
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2
in class SurfaceFileReader
void getSurfaceData() throws java.lang.Exception
getSurfaceData
in class PolygonFileReader
java.lang.Exception
private boolean readVerticesAndPolygons()
private void readColor() throws java.lang.Exception
java.lang.Exception
private boolean readVertices() throws java.lang.Exception
java.lang.Exception
private void createMesh()
private java.lang.String nextToken() throws java.lang.Exception
java.lang.Exception
private int getInt() throws java.lang.Exception
java.lang.Exception
private float getFloat() throws java.lang.Exception
java.lang.Exception