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Package Hierarchies:
org.jmol.adapter.readers.cif
,
org.jmol.adapter.readers.molxyz
,
org.jmol.adapter.readers.more
,
org.jmol.adapter.readers.pdb
,
org.jmol.adapter.readers.pymol
,
org.jmol.adapter.readers.quantum
,
org.jmol.adapter.readers.simple
,
org.jmol.adapter.readers.xml
,
org.jmol.adapter.readers.xtal
,
org.jmol.adapter.smarter
,
org.jmol.api
,
org.jmol.applet
,
org.jmol.appletjs
,
org.jmol.atomdata
,
org.jmol.awt
,
org.jmol.awtjs
,
org.jmol.awtjs2d
,
org.jmol.bspt
,
org.jmol.c
,
org.jmol.console
,
org.jmol.consolejs
,
org.jmol.dialog
,
org.jmol.dssx
,
org.jmol.export
,
org.jmol.g3d
,
org.jmol.geodesic
,
org.jmol.i18n
,
org.jmol.image
,
org.jmol.io
,
org.jmol.java
,
org.jmol.jsv
,
org.jmol.jvxl.api
,
org.jmol.jvxl.calc
,
org.jmol.jvxl.data
,
org.jmol.jvxl.readers
,
org.jmol.minimize
,
org.jmol.minimize.forcefield
,
org.jmol.modelkit
,
org.jmol.modelset
,
org.jmol.modelsetbio
,
org.jmol.multitouch
,
org.jmol.multitouch.jni
,
org.jmol.multitouch.sparshui
,
org.jmol.navigate
,
org.jmol.popup
,
org.jmol.quantum
,
org.jmol.render
,
org.jmol.renderbio
,
org.jmol.rendercgo
,
org.jmol.renderspecial
,
org.jmol.rendersurface
,
org.jmol.script
,
org.jmol.scriptext
,
org.jmol.shape
,
org.jmol.shapebio
,
org.jmol.shapecgo
,
org.jmol.shapespecial
,
org.jmol.shapesurface
,
org.jmol.smiles
,
org.jmol.symmetry
,
org.jmol.thread
,
org.jmol.util
,
org.jmol.viewer
,
org.jmol.viewer.binding
,
org.openscience.chimetojmol
,
org.openscience.jmol.app
,
org.openscience.jmol.app.jmolpanel
,
org.openscience.jmol.app.jmolpanel.console
,
org.openscience.jmol.app.jsonkiosk
,
org.openscience.jmol.app.surfacetool
,
org.openscience.jmol.app.webexport
,
org.openscience.jvxl
,
org.openscience.jvxl.simplewriter
Class Hierarchy
java.lang.Object
org.jmol.export.
___Exporter
org.jmol.export.
__CartesianExporter
org.jmol.export.
_IdtfExporter
org.jmol.export.
_MayaExporter
org.jmol.export.
_ObjExporter
org.jmol.export.
_VrmlExporter
org.jmol.export.
_X3dExporter
org.jmol.export.
JSExporter
org.jmol.export.
__RayTracerExporter
org.jmol.export.
_PovrayExporter
org.jmol.export.
_TachyonExporter
javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
DisplayPanel.CheckBoxMenuItemAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.DefineCenterAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.HomeAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.MoveToAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.SetStatusAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AboutAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AtomSetChooserAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CloseAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ConsoleAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyImageAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CreditsAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExecuteScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExitAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExportAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.GaussianAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NBOAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenMolAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenPdbAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenUrlAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewwinAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PasteClipboardAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PovrayAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PrintAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.RecentFilesAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ResizeAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptEditorAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptWindowAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.SurfaceToolAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ToWebAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.UguideAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ViewMeasurementTableAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WhatsNewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WriteAction
org.openscience.jmol.app.jmolpanel.
PreferencesDialog.PrefsAction
javax.swing.text.AbstractDocument (implements javax.swing.text.Document, java.io.Serializable)
javax.swing.text.DefaultStyledDocument (implements javax.swing.text.StyledDocument)
org.openscience.jmol.app.jmolpanel.console.
AppConsole.ConsoleDocument
org.jmol.console.
ScriptEditor.EditorDocument
javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementTableModel
org.jmol.viewer.
ActionManager
(implements javajs.api.EventManager)
org.jmol.multitouch.
ActionManagerMT
(implements org.jmol.multitouch.
JmolMultiTouchClient
)
org.jmol.adapter.readers.quantum.
AdfReader.SymmetryData
org.jmol.viewer.
AnimationManager
org.jmol.dssx.
AnnotationParser
(implements org.jmol.api.
JmolAnnotationParser
)
org.openscience.jmol.app.webexport.
ArrayListTransferHandler.ArrayListTransferable
(implements java.awt.datatransfer.Transferable)
org.openscience.jvxl.simplewriter.
ASimpleJvxlWriter
org.jmol.modelset.
AtomCollection
org.jmol.modelset.
BondCollection
org.jmol.modelset.
ModelSet
org.jmol.modelset.
AtomCollection.AtomSorter
(implements java.util.Comparator<T>)
org.jmol.atomdata.
AtomData
org.jmol.adapter.smarter.
AtomIterator
(implements org.jmol.api.
JmolAdapterAtomIterator
)
org.jmol.modelset.
AtomIteratorWithinModel
(implements org.jmol.api.
AtomIndexIterator
)
org.jmol.modelset.
AtomIteratorWithinModelSet
org.jmol.adapter.smarter.
AtomSetCollection
org.jmol.adapter.smarter.
AtomSetCollectionReader
(implements javajs.api.GenericLineReader)
org.jmol.adapter.readers.xtal.
AbinitReader
org.jmol.adapter.readers.xtal.
AimsReader
org.jmol.adapter.readers.simple.
AlchemyReader
org.jmol.adapter.readers.simple.
AmpacReader
org.jmol.adapter.readers.quantum.
BasisFunctionReader
org.jmol.adapter.readers.quantum.
MOReader
org.jmol.adapter.readers.quantum.
GamessReader
org.jmol.adapter.readers.quantum.
GamessUKReader
org.jmol.adapter.readers.quantum.
GamessUSReader
org.jmol.adapter.readers.quantum.
GaussianReader
org.jmol.adapter.readers.quantum.
GaussianFchkReader
org.jmol.adapter.readers.quantum.
GenNBOReader
org.jmol.adapter.readers.quantum.
JaguarReader
org.jmol.adapter.readers.quantum.
NWChemReader
org.jmol.adapter.readers.quantum.
PsiReader
org.jmol.adapter.readers.quantum.
QchemReader
org.jmol.adapter.readers.quantum.
SlaterReader
org.jmol.adapter.readers.quantum.
AdfReader
org.jmol.adapter.readers.quantum.
DgridReader
org.jmol.adapter.readers.quantum.
MopacSlaterReader
org.jmol.adapter.readers.quantum.
CsfReader
org.jmol.adapter.readers.quantum.
MoldenReader
org.jmol.adapter.readers.quantum.
MopacGraphfReader
org.jmol.adapter.readers.quantum.
WebMOReader
org.jmol.adapter.readers.quantum.
SpartanInputReader
org.jmol.adapter.readers.quantum.
OdysseyReader
org.jmol.adapter.readers.quantum.
SpartanSmolReader
org.jmol.adapter.readers.quantum.
SpartanReader
org.jmol.adapter.readers.xtal.
BilbaoReader
org.jmol.adapter.readers.more.
BinaryDcdReader
org.jmol.adapter.readers.xtal.
CastepReader
org.jmol.adapter.readers.xtal.
CgdReader
org.jmol.adapter.readers.cif.
CifReader
org.jmol.adapter.readers.cif.
MMCifReader
org.jmol.adapter.readers.xtal.
CrystalReader
org.jmol.adapter.readers.simple.
CubeReader
org.jmol.adapter.readers.xtal.
DmolReader
org.jmol.adapter.readers.xtal.
EspressoReader
org.jmol.adapter.readers.simple.
FoldingXyzReader
org.jmol.adapter.readers.simple.
TinkerReader
org.jmol.adapter.readers.more.
ForceFieldReader
org.jmol.adapter.readers.more.
MdTopReader
org.jmol.adapter.readers.more.
Mol2Reader
org.jmol.adapter.readers.quantum.
GaussianWfnReader
org.jmol.adapter.readers.simple.
GhemicalMMReader
org.jmol.adapter.readers.more.
GromacsReader
org.jmol.adapter.readers.xtal.
GulpReader
org.jmol.adapter.readers.simple.
HyperChemReader
org.jmol.adapter.readers.simple.
InputReader
org.jmol.adapter.readers.simple.
MopacArchiveReader
org.jmol.adapter.readers.xtal.
JanaReader
org.jmol.adapter.readers.simple.
JmeReader
org.jmol.adapter.readers.simple.
JSONReader
org.jmol.adapter.readers.xtal.
MagresReader
org.jmol.adapter.readers.more.
MdCrdReader
org.jmol.adapter.readers.molxyz.
MolReader
org.jmol.adapter.readers.more.
JcampdxReader
(implements org.jmol.api.
JmolJDXMOLReader
)
org.jmol.adapter.readers.molxyz.
Mol3DReader
org.jmol.adapter.readers.simple.
MopacReader
org.jmol.adapter.readers.pdb.
PdbReader
org.jmol.adapter.readers.pdb.
P2nReader
org.jmol.adapter.readers.pdb.
PqrReader
org.jmol.adapter.readers.pymol.
PyMOLReader
(implements org.jmol.api.
PymolAtomReader
)
org.jmol.adapter.readers.xtal.
ShelxReader
org.jmol.adapter.readers.xtal.
SiestaReader
org.jmol.adapter.readers.more.
TlsDataOnlyReader
org.jmol.adapter.readers.xtal.
VaspChgcarReader
org.jmol.adapter.readers.xtal.
VaspOutcarReader
org.jmol.adapter.readers.xtal.
VaspPoscarReader
org.jmol.adapter.readers.xtal.
Wien2kReader
org.jmol.adapter.readers.xtal.
XcrysdenReader
org.jmol.adapter.readers.xml.
XmlReader
org.jmol.adapter.readers.xml.
XmlArgusReader
org.jmol.adapter.readers.xml.
XmlChem3dReader
org.jmol.adapter.readers.xml.
XmlCmlReader
org.jmol.adapter.readers.xml.
XmlMolproReader
org.jmol.adapter.readers.xml.
XmlMagResReader
org.jmol.adapter.readers.xml.
XmlOdysseyReader
org.jmol.adapter.readers.xml.
XmlQEReader
org.jmol.adapter.readers.xml.
XmlVaspReader
org.jmol.adapter.readers.xml.
XmlXsdReader
org.jmol.adapter.readers.molxyz.
XyzReader
org.jmol.adapter.smarter.
AtomSetObject
org.jmol.adapter.smarter.
Bond
org.jmol.minimize.forcefield.
AtomType
org.jmol.image.
AviCreator
(implements org.jmol.api.
JmolMovieCreatorInterface
)
org.jmol.awt.
AwtClipboard
(implements java.awt.datatransfer.Transferable)
org.jmol.awt.
AwtFont
org.jmol.awt.
AwtG2D
(implements org.jmol.api.
GenericGraphics
)
org.jmol.popup.
AwtSwingComponent
(implements javajs.api.SC)
org.jmol.popup.
AwtSwingPopupHelper
(implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.MouseListener, org.jmol.popup.
PopupHelper
)
org.jmol.modelsetbio.
BasePair
org.jmol.adapter.readers.quantum.
BasisFunctionReader.MOEnergySorter
(implements java.util.Comparator<T>)
org.jmol.viewer.binding.
Binding
org.jmol.viewer.binding.
JmolBinding
org.jmol.viewer.binding.
DragBinding
org.jmol.viewer.binding.
PfaatBinding
org.jmol.viewer.binding.
RasmolBinding
org.jmol.modelsetbio.
BioPolymer
org.jmol.modelsetbio.
AlphaPolymer
org.jmol.modelsetbio.
AminoPolymer
org.jmol.modelsetbio.
CarbohydratePolymer
org.jmol.modelsetbio.
PhosphorusPolymer
org.jmol.modelsetbio.
NucleicPolymer
org.jmol.modelset.
BondIteratorSelected
(implements org.jmol.modelset.
BondIterator
)
org.jmol.util.
BoxInfo
org.jmol.dssx.
Bridge
org.jmol.java.
BS
(implements java.lang.Cloneable, javajs.api.JSONEncodable)
org.jmol.modelset.
BondSet
org.jmol.bspt.
Bspf
org.jmol.bspt.
Bspt
org.jmol.util.
BSUtil
org.jmol.util.
C
org.jmol.minimize.forcefield.
Calculation
org.jmol.minimize.forcefield.
MMFFAngleCalc
org.jmol.minimize.forcefield.
MMFFDistanceCalc
org.jmol.minimize.forcefield.
MMFFESCalc
org.jmol.minimize.forcefield.
MMFFOOPCalc
org.jmol.minimize.forcefield.
MMFFSBCalc
org.jmol.minimize.forcefield.
MMFFTorsionCalc
org.jmol.minimize.forcefield.
MMFFVDWCalc
org.jmol.minimize.forcefield.
UFFAngleCalc
org.jmol.minimize.forcefield.
UFFDistanceCalc
org.jmol.minimize.forcefield.
UFFOOPCalc
org.jmol.minimize.forcefield.
UFFTorsionCalc
org.jmol.minimize.forcefield.
UFFVDWCalc
org.jmol.minimize.forcefield.
Calculations
org.jmol.minimize.forcefield.
CalculationsMMFF
org.jmol.minimize.forcefield.
CalculationsUFF
org.jmol.modelset.
Chain
org.openscience.chimetojmol.
ChimeToJmol
org.jmol.g3d.
CircleRenderer
(implements org.jmol.g3d.
G3DRenderer
)
org.jmol.scriptext.
CmdExt
(implements org.jmol.script.
JmolCmdExtension
)
org.jmol.scriptext.
IsoExt
java.awt.Color (implements java.awt.Paint, java.io.Serializable)
org.jmol.awt.
AwtColor
(implements javajs.api.GenericColor)
org.jmol.util.
ColorEncoder
org.jmol.viewer.
ColorManager
org.jmol.util.
CommandHistory
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
javax.swing.JButton (implements javax.accessibility.Accessible)
org.jmol.console.
JmolButton
(implements org.jmol.api.
JmolAbstractButton
)
org.openscience.jmol.app.jmolpanel.
JmolPanel.AnimButton
(implements java.awt.event.MouseListener)
javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
javax.swing.JCheckBoxMenuItem (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.jmol.console.
KeyJCheckBoxMenuItem
(implements org.jmol.api.
JmolAbstractButton
)
javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.jmol.console.
KeyJMenu
(implements org.jmol.api.
JmolAbstractButton
)
javax.swing.JRadioButtonMenuItem (implements javax.accessibility.Accessible)
org.jmol.console.
KeyJRadioButtonMenuItem
(implements org.jmol.api.
JmolAbstractButton
)
org.jmol.console.
KeyJMenuItem
(implements org.jmol.api.
JmolAbstractButton
)
javax.swing.JToggleButton (implements javax.accessibility.Accessible)
javax.swing.JCheckBox (implements javax.accessibility.Accessible)
org.jmol.console.
KeyJCheckBox
(implements org.jmol.api.
JmolAbstractButton
)
org.jmol.console.
JmolToggleButton
(implements org.jmol.api.
JmolAbstractButton
)
javax.swing.JFileChooser (implements javax.accessibility.Accessible)
org.jmol.dialog.
FileChooser
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.jmol.console.
JmolLabel
(implements org.jmol.api.
JmolAbstractButton
)
org.openscience.jmol.app.surfacetool.
SurfaceToolGUI.SurfaceListCellRenderer
(implements javax.swing.ListCellRenderer<E>)
org.openscience.jmol.app.webexport.
WebPanel.InstanceCellRenderer
(implements javax.swing.ListCellRenderer<E>)
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.openscience.chimetojmol.
ChimePanel
(implements java.awt.event.ActionListener, java.awt.event.ItemListener)
org.jmol.dialog.
Dialog
(implements org.jmol.api.
JmolDialogInterface
)
org.openscience.jmol.app.jmolpanel.
DisplayPanel
(implements java.awt.event.ComponentListener, org.jmol.awt.
JmolFrame
, java.awt.print.Printable)
org.jmol.dialog.
FilePreview
(implements java.beans.PropertyChangeListener)
org.jmol.dialog.
FilePreview.FPPanel
org.openscience.jmol.app.jmolpanel.
JmolPanel
(implements org.openscience.jmol.app.jsonkiosk.
JsonNioClient
, org.openscience.jmol.app.
SplashInterface
)
org.openscience.jmol.app.
Jmol
org.openscience.jmol.app.webexport.
Molecules
org.openscience.jmol.app.webexport.
Orbitals
org.openscience.jmol.app.jmolpanel.
StatusBar
org.openscience.jmol.app.surfacetool.
SurfaceToolGUI
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, javax.swing.event.ListSelectionListener, javax.swing.WindowConstants, java.awt.event.WindowFocusListener, java.awt.event.WindowListener)
org.openscience.jmol.app.webexport.
Test
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
WebExport
(implements java.awt.event.WindowListener)
org.openscience.jmol.app.webexport.
WebPanel
(implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
org.openscience.jmol.app.webexport.
PopInJmol
(implements javax.swing.event.ChangeListener)
org.openscience.jmol.app.webexport.
ScriptButtons
javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
javax.swing.JEditorPane
javax.swing.JTextPane
org.openscience.jmol.app.jmolpanel.console.
AppConsole.ConsoleTextPane
org.jmol.console.
AppletConsole.GenericTextPane
(implements org.jmol.console.
GenericTextArea
)
org.jmol.console.
ScriptEditor.EditorTextPane
javax.swing.JTextArea
org.jmol.console.
AppletConsole.ControlEnterTextArea
(implements org.jmol.console.
GenericTextArea
)
org.openscience.jmol.app.jmolpanel.console.
ConsoleTextArea
java.awt.Panel (implements javax.accessibility.Accessible)
java.applet.Applet
org.jmol.applet.
AppletWrapper
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AboutDialog
(implements javax.swing.event.HyperlinkListener)
org.openscience.jmol.app.jmolpanel.
GaussianDialog
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.awt.event.MouseListener)
org.openscience.jmol.app.jmolpanel.
HelpDialog
(implements javax.swing.event.HyperlinkListener)
org.openscience.jmol.app.jmolpanel.
CreditsDialog
org.openscience.jmol.app.jmolpanel.
WhatsNewDialog
org.openscience.jmol.app.jmolpanel.
MeasurementTable
org.openscience.jmol.app.jmolpanel.
NBODialog
(implements javax.swing.event.ChangeListener)
org.openscience.jmol.app.jmolpanel.
PovrayDialog
org.openscience.jmol.app.jmolpanel.
PreferencesDialog
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
RecentFilesDialog
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.jmol.console.
ScriptEditor
(implements java.awt.event.ActionListener, org.jmol.api.
JmolScriptEditorInterface
)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.beans.PropertyChangeListener, java.lang.Runnable, javax.swing.event.TreeSelectionListener)
org.openscience.jmol.app.jsonkiosk.
BannerFrame
org.openscience.jmol.app.jsonkiosk.
KioskFrame
org.openscience.jmol.app.jmolpanel.
Splash
(implements org.openscience.jmol.app.
SplashInterface
)
org.jmol.viewer.
Connection
org.jmol.viewer.
Connections
org.jmol.util.
ContactPair
org.jmol.bspt.
CubeIterator
org.jmol.g3d.
CylinderRenderer
org.jmol.viewer.
DataManager
(implements org.jmol.api.
JmolDataManager
)
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
org.jmol.adapter.readers.xml.
XmlHandler
(implements org.jmol.adapter.readers.xml.
JmolXmlHandler
)
org.jmol.util.
DefaultLogger
(implements org.jmol.util.
LoggerInterface
)
javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser.AtomSet
org.jmol.dialog.
Dialog.ExportChoiceListener
(implements java.awt.event.ItemListener)
org.jmol.dialog.
Dialog.QualityListener
(implements javax.swing.event.ChangeListener)
java.util.Dictionary<K,V>
java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
org.openscience.jmol.app.jsonkiosk.
JsonNioService.JSONObject
org.jmol.export.
UseTable
org.jmol.shapespecial.
Dipole
org.jmol.awt.
Display
org.jmol.awtjs2d.
Display
org.jmol.io.
DOMReader
org.jmol.dssx.
DSSP
(implements org.jmol.api.
DSSPInterface
)
org.jmol.util.
Edge
org.jmol.modelset.
Bond
org.jmol.modelset.
HBond
org.jmol.smiles.
SmilesBond
org.jmol.util.
EigenSort
(implements java.util.Comparator<T>)
org.jmol.bspt.
Element
org.jmol.bspt.
Leaf
org.jmol.bspt.
Node
org.jmol.util.
Elements
org.jmol.shapespecial.
Ellipsoid
org.jmol.geodesic.
EnvelopeCalculation
(implements org.jmol.api.
JmolEnvCalc
)
org.jmol.util.
Escape
org.jmol.export.
Export3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.minimize.forcefield.
FFParam
java.io.File (implements java.lang.Comparable<T>, java.io.Serializable)
org.jmol.awt.
AwtFile
(implements javajs.api.GenericFileInterface)
org.jmol.awt.
FileDropper
(implements java.awt.dnd.DropTargetListener)
javax.swing.filechooser.FileFilter
org.jmol.dialog.
Dialog.TypeFilter
org.jmol.viewer.
FileManager
(implements javajs.api.BytePoster)
org.jmol.io.
FileReader
org.openscience.jvxl.
FileReader
org.jmol.io.
FilesReader
(implements org.jmol.api.
JmolFilesReaderInterface
)
org.openscience.jmol.app.jmolpanel.
FileTyper
org.jmol.minimize.forcefield.
ForceField
org.jmol.minimize.forcefield.
ForceFieldMMFF
org.jmol.minimize.forcefield.
ForceFieldUFF
org.jmol.util.
GData
(implements org.jmol.api.
JmolGraphicsInterface
)
org.jmol.g3d.
Graphics3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.util.
GenericApplet
(implements org.jmol.api.
JmolAppletInterface
, org.jmol.api.
JmolStatusListener
)
org.jmol.applet.
Jmol
(implements org.jmol.applet.
WrappedApplet
)
org.jmol.appletjs.
Jmol
(implements javajs.api.JSInterface)
org.jmol.console.
GenericConsole
(implements org.jmol.api.
JmolAppConsoleInterface
, org.jmol.api.
JmolCallbackListener
)
org.jmol.consolejs.
AppletConsole
org.jmol.console.
JmolConsole
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.openscience.jmol.app.jmolpanel.console.
AppConsole
(implements org.openscience.jmol.app.jmolpanel.console.
EnterListener
)
org.jmol.console.
AppletConsole
org.jmol.popup.
GenericSwingPopup
(implements javajs.api.GenericMenuInterface)
org.jmol.popup.
JmolGenericPopup
org.jmol.popup.
JmolAwtPopup
org.jmol.awtjs2d.
JmolJSPopup
org.jmol.awtjs2d.
JSModelKitPopup
org.jmol.modelkit.
ModelKitPopup
org.jmol.util.
Geodesic
org.jmol.viewer.
Gesture
org.jmol.viewer.
GlobalSettings
org.jmol.modelset.
Group
org.jmol.modelsetbio.
Monomer
org.jmol.modelsetbio.
AlphaMonomer
org.jmol.modelsetbio.
AminoMonomer
org.jmol.modelsetbio.
CarbohydrateMonomer
org.jmol.modelsetbio.
PhosphorusMonomer
org.jmol.modelsetbio.
NucleicMonomer
org.jmol.i18n.
GT
(implements org.jmol.api.
Translator
)
org.openscience.jmol.app.jmolpanel.
GuiMap
org.jmol.symmetry.
HallInfo
org.jmol.symmetry.
HallRotation
org.jmol.symmetry.
HallRotationTerm
org.jmol.symmetry.
HallTranslation
org.openscience.jmol.app.jmolpanel.
HelpDialog.PageLoader
(implements java.lang.Runnable)
org.jmol.g3d.
HermiteRenderer
(implements org.jmol.g3d.
G3DRenderer
)
org.openscience.jmol.app.
HistoryFile
org.jmol.awt.
Image
org.jmol.awtjs.
Image
org.jmol.awtjs2d.
Image
org.jmol.g3d.
ImageRenderer
java.io.InputStream (implements java.io.Closeable)
java.io.FilterInputStream
org.openscience.jvxl.
MonitorInputStream
org.jmol.util.
Int2IntHash
org.jmol.util.
Int2IntHashEntry
org.jmol.api.
Interface
org.jmol.jvxl.readers.
IsoSolventReader.Face
org.jmol.viewer.
JC
org.jmol.jsv.
JDXMOLParser
(implements org.jmol.api.
JmolJDXMOLParser
)
org.jmol.api.
JmolAdapter
org.jmol.adapter.smarter.
SmarterJmolAdapter
org.jmol.api.
JmolAdapterBondIterator
org.jmol.adapter.smarter.
BondIterator
org.jmol.api.
JmolAdapterStructureIterator
org.jmol.adapter.smarter.
StructureIterator
org.openscience.jmol.app.
JmolApp
(implements org.jmol.api.
JmolAppAPI
)
org.openscience.jmol.app.
JmolApp.OptSort
(implements java.util.Comparator<T>)
org.jmol.io.
JmolBinary
org.jmol.console.
JmolConsole.FileChecker
(implements java.io.FilenameFilter)
org.openscience.jmol.app.
JmolData
org.openscience.jmol.app.webexport.
JmolInstance
org.jmol.util.
JmolMolecule
org.jmol.smiles.
SmilesSearch
org.jmol.multitouch.
JmolMultiTouchClientAdapter
(implements org.jmol.multitouch.
JmolMultiTouchAdapter
)
org.jmol.multitouch.jni.
JmolJniClientAdapter
org.jmol.multitouch.sparshui.
JmolSparshClientAdapter
(implements com.sparshui.client.SparshClient)
org.jmol.adapter.readers.pymol.
JmolObject
org.openscience.jmol.app.jmolpanel.
JmolPanel.ActionChangedListener
(implements java.beans.PropertyChangeListener)
org.openscience.jmol.app.jmolpanel.
JmolResourceHandler
org.jmol.viewer.
JmolStateCreator
org.jmol.viewer.
StateCreator
org.jmol.io.
JmolUtil
(implements org.jmol.api.
JmolZipUtilities
)
org.jmol.api.
JmolViewer
org.jmol.viewer.
Viewer
(implements org.jmol.atomdata.
AtomDataServer
, javajs.api.PlatformViewer)
org.jmol.awtjs2d.
JSFile
(implements javajs.api.GenericFileInterface)
org.jmol.awtjs.
JSFont
org.jmol.awtjs2d.
JSFont
org.jmol.awtjs2d.
JsG2D
(implements org.jmol.api.
GenericGraphics
)
org.openscience.jmol.app.jsonkiosk.
JsonNioService.JsonNioServerThread
(implements java.lang.Runnable)
org.openscience.jmol.app.jsonkiosk.
JsonNioService.JsonNioThread
(implements java.lang.Runnable)
org.jmol.jsv.
JSpecView
(implements org.jmol.api.
JmolJSpecView
)
org.jmol.popup.
JSSwingPopupHelper
(implements org.jmol.popup.
PopupHelper
)
org.openscience.jvxl.
Jvxl
org.jmol.jvxl.data.
JvxlCoder
org.jmol.jvxl.data.
JvxlData
org.openscience.jvxl.simplewriter.
JvxlWrite
org.jmol.modelset.
LabelToken
org.jmol.i18n.
Language
org.jmol.g3d.
LineRenderer
org.jmol.util.
Logger
org.openscience.jmol.app.webexport.
LogPanel
org.openscience.jmol.app.jmolpanel.
LoopedStreams
javajs.util.M34
javajs.util.M4
org.jmol.symmetry.
SymmetryOperation
org.jmol.jvxl.calc.
MarchingSquares
org.jmol.jvxl.calc.
MarchingSquares.Triangle
org.jmol.scriptext.
MathExt
(implements org.jmol.script.
JmolMathExtension
)
org.jmol.modelset.
Measurement
org.jmol.modelset.
MeasurementPending
org.jmol.modelset.
MeasurementData
(implements org.jmol.api.
JmolMeasurementClient
)
org.jmol.util.
MeshCapper
org.jmol.export.
MeshData
org.jmol.jvxl.data.
MeshData.SortSet
(implements java.util.Comparator<T>)
org.jmol.jvxl.data.
MeshData.SSet
org.jmol.util.
MeshSlicer
org.jmol.util.
MeshSurface
org.jmol.shape.
Mesh
org.jmol.shapespecial.
DrawMesh
org.jmol.shapecgo.
CGOMesh
org.jmol.shapesurface.
IsosurfaceMesh
org.jmol.jvxl.data.
MeshData
org.jmol.minimize.
MinAtom
org.jmol.minimize.
Minimizer
(implements org.jmol.api.
MinimizerInterface
)
org.jmol.minimize.
MinObject
org.jmol.minimize.
MinAngle
org.jmol.minimize.
MinBond
org.jmol.minimize.
MinPosition
org.jmol.minimize.
MinTorsion
org.jmol.adapter.readers.cif.
MMCifValidationParser
org.jmol.modelset.
Model
org.jmol.modelsetbio.
BioModel
org.jmol.modelset.
ModelLoader
org.jmol.viewer.
ModelManager
org.jmol.util.
Modulation
org.jmol.viewer.
MotionPoint
org.jmol.awt.
Mouse
(implements javajs.api.GenericMouseInterface, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
org.jmol.awtjs2d.
Mouse
(implements javajs.api.GenericMouseInterface)
org.jmol.viewer.
MouseState
org.jmol.thread.
MoveToThread.Slider
org.jmol.adapter.readers.cif.
MSRdr
(implements org.jmol.adapter.smarter.
MSInterface
)
org.jmol.adapter.readers.cif.
MSCifRdr
naga.NIOService
org.openscience.jmol.app.jsonkiosk.
JsonNioService
(implements org.openscience.jmol.app.jsonkiosk.
JsonNioServer
)
org.jmol.quantum.
NMRCalculation
(implements org.jmol.api.
JmolNMRInterface
)
org.jmol.util.
Normix
org.jmol.renderbio.
NucleicRenderer
org.jmol.modelset.
Object2d
org.jmol.modelset.
Text
org.jmol.modelset.
Orientation
org.jmol.viewer.
OutputManager
org.jmol.viewer.
OutputManagerAwt
org.jmol.viewer.
OutputManagerJS
org.jmol.jvxl.readers.
Parameters
org.jmol.util.
Parser
org.jmol.util.
PatternMatcher
(implements org.jmol.api.
JmolPatternMatcher
)
org.jmol.adapter.readers.pymol.
PickleReader
org.jmol.g3d.
Pixelator
org.jmol.g3d.
PixelatorScreened
org.jmol.g3d.
PixelatorShaded
org.jmol.g3d.
PixelatorT
org.jmol.awt.
Platform
(implements javajs.api.GenericPlatform)
org.jmol.awtjs2d.
Platform
(implements javajs.api.GenericPlatform)
org.jmol.awtjs.
Platform
org.jmol.g3d.
Platform3D
org.jmol.symmetry.
PointGroup
org.jmol.symmetry.
PointGroup.Operation
org.jmol.shapespecial.
Polyhedron
org.jmol.popup.
PopupResource
org.jmol.popup.
MainPopupResourceBundle
org.jmol.modelkit.
ModelKitPopupResourceBundle
org.jmol.viewer.
PropertyManager
(implements org.jmol.api.
JmolPropertyManager
)
org.jmol.modelsetbio.
ProteinStructure
org.jmol.modelsetbio.
Annotation
org.jmol.modelsetbio.
Helix
org.jmol.modelsetbio.
Sheet
org.jmol.modelsetbio.
Turn
org.jmol.adapter.readers.pymol.
PyMOL
org.jmol.adapter.readers.pymol.
PyMOLGroup
org.jmol.adapter.readers.pymol.
PyMOLScene
(implements org.jmol.api.
JmolSceneGenerator
)
org.jmol.adapter.readers.quantum.
QchemReader.MOInfo
org.jmol.quantum.
QS
org.jmol.quantum.
QuantumCalculation
org.jmol.quantum.
MepCalculation
(implements org.jmol.api.
MepCalculationInterface
)
org.jmol.quantum.
MlpCalculation
org.jmol.quantum.
MOCalculation
(implements org.jmol.api.
MOCalculationInterface
)
org.jmol.quantum.
NciCalculation
(implements org.jmol.api.
QuantumPlaneCalculationInterface
)
org.jmol.atomdata.
RadiusData
org.jmol.util.
Rectangle
org.jmol.render.
RepaintManager
(implements org.jmol.api.
JmolRepaintManager
)
org.jmol.adapter.smarter.
Resolver
org.jmol.modelsetbio.
Resolver
(implements org.jmol.api.
JmolBioResolver
)
org.jmol.modelsetbio.
Resolver.BondSorter
(implements java.util.Comparator<T>)
org.jmol.i18n.
Resource
org.jmol.util.
Rgb16
org.jmol.renderbio.
RocketRenderer
org.jmol.viewer.
Scene
org.jmol.script.
ScriptContext
org.jmol.console.
ScriptEditor.EditorDocument.MyUndoableEditListener
(implements javax.swing.event.UndoableEditListener)
org.jmol.script.
ScriptError
(implements org.jmol.api.
JmolScriptEvaluator
)
org.jmol.script.
ScriptParam
org.jmol.script.
ScriptExpr
org.jmol.script.
ScriptEval
org.jmol.script.
ScriptFlowContext
org.jmol.script.
ScriptFunction
(implements org.jmol.api.
JmolScriptFunction
)
org.jmol.script.
ScriptParallelProcessor
(implements org.jmol.api.
JmolParallelProcessor
)
org.jmol.script.
ScriptManager
(implements org.jmol.api.
JmolScriptManager
)
org.jmol.script.
ScriptMathProcessor
org.jmol.script.
ScriptProcess
org.jmol.script.
ScriptProcessRunnable
(implements java.lang.Runnable)
org.jmol.script.
ScriptTokenParser
org.jmol.script.
ScriptCompiler
org.jmol.viewer.
SelectionManager
org.jmol.util.
Shader
org.jmol.shape.
Shape
org.jmol.shape.
AtomShape
org.jmol.shape.
Balls
org.jmol.shapebio.
BioShape
org.jmol.shapespecial.
Dots
org.jmol.shapespecial.
GeoSurface
org.jmol.shape.
Halos
org.jmol.shape.
Labels
org.jmol.shape.
Measures
(implements org.jmol.api.
JmolMeasurementClient
)
org.jmol.shapespecial.
Polyhedra
org.jmol.shape.
Stars
org.jmol.shapespecial.
Vectors
org.jmol.shapebio.
BioShapeCollection
org.jmol.shapebio.
Backbone
org.jmol.shapebio.
Ribbons
org.jmol.shapebio.
Rockets
org.jmol.shapebio.
Cartoon
org.jmol.shapebio.
Strands
org.jmol.shapebio.
MeshRibbon
org.jmol.shapebio.
Trace
org.jmol.shapespecial.
Dipoles
org.jmol.shapespecial.
Ellipsoids
org.jmol.shape.
FontShape
org.jmol.shape.
FontLineShape
org.jmol.shape.
Axes
org.jmol.shape.
Bbcage
org.jmol.shape.
Uccage
org.jmol.shape.
Frank
org.jmol.shape.
MeshCollection
org.jmol.shapespecial.
Draw
org.jmol.shapecgo.
CGO
org.jmol.shapesurface.
Isosurface
(implements org.jmol.jvxl.api.
MeshDataServer
)
org.jmol.shapesurface.
Contact
org.jmol.shapesurface.
LcaoCartoon
org.jmol.shapesurface.
MolecularOrbital
org.jmol.shapesurface.
NBO
org.jmol.shapesurface.
Pmesh
org.jmol.shapesurface.
Plot3D
org.jmol.shape.
Object2dShape
org.jmol.shape.
TextShape
org.jmol.shape.
Echo
org.jmol.shape.
Hover
org.jmol.shape.
Sticks
org.jmol.viewer.
ShapeManager
org.jmol.render.
ShapeRenderer
org.jmol.render.
BallsRenderer
org.jmol.renderspecial.
DipolesRenderer
org.jmol.renderspecial.
DotsRenderer
org.jmol.renderspecial.
GeoSurfaceRenderer
org.jmol.renderspecial.
EllipsoidsRenderer
org.jmol.render.
FontLineShapeRenderer
org.jmol.render.
AxesRenderer
org.jmol.render.
CageRenderer
org.jmol.render.
BbcageRenderer
org.jmol.render.
UccageRenderer
org.jmol.render.
LabelsRenderer
org.jmol.render.
EchoRenderer
org.jmol.render.
MeasuresRenderer
org.jmol.render.
SticksRenderer
org.jmol.render.
FrankRenderer
org.jmol.render.
HalosRenderer
org.jmol.render.
HoverRenderer
org.jmol.render.
MeshRenderer
org.jmol.renderbio.
BioShapeRenderer
org.jmol.renderbio.
BackboneRenderer
org.jmol.renderbio.
StrandsRenderer
org.jmol.renderbio.
MeshRibbonRenderer
org.jmol.renderbio.
RibbonsRenderer
org.jmol.renderbio.
RocketsRenderer
org.jmol.renderbio.
CartoonRenderer
org.jmol.renderbio.
TraceRenderer
org.jmol.renderspecial.
DrawRenderer
org.jmol.rendercgo.
CGORenderer
org.jmol.rendersurface.
IsosurfaceRenderer
org.jmol.rendersurface.
ContactRenderer
org.jmol.rendersurface.
LcaoCartoonRenderer
org.jmol.rendersurface.
MolecularOrbitalRenderer
org.jmol.rendersurface.
NBORenderer
org.jmol.rendersurface.
PmeshRenderer
org.jmol.rendersurface.
Plot3DRenderer
org.jmol.renderspecial.
PolyhedraRenderer
org.jmol.render.
StarsRenderer
org.jmol.renderspecial.
VectorsRenderer
org.openscience.jvxl.simplewriter.
SimpleMarchingCubesOld
org.jmol.util.
SimpleUnitCell
org.jmol.symmetry.
UnitCell
org.jmol.multitouch.sparshui.
SinglePointGesture
(implements com.sparshui.gestures.Gesture)
org.jmol.quantum.
SlaterData
org.jmol.adapter.readers.quantum.
SlaterReader.OrbitalSorter
(implements java.util.Comparator<T>)
org.jmol.adapter.readers.quantum.
SlaterReader.SlaterSorter
(implements java.util.Comparator<T>)
org.openscience.jmol.app.surfacetool.
Slice
org.jmol.smiles.
SmilesAromatic
org.jmol.scriptext.
SmilesExt
(implements org.jmol.script.
JmolSmilesExtension
)
org.jmol.smiles.
SmilesGenerator
org.jmol.smiles.
SmilesMatcher
(implements org.jmol.api.
SmilesMatcherInterface
)
org.jmol.smiles.
SmilesMeasure
org.jmol.smiles.
SmilesParser
org.jmol.symmetry.
SpaceGroup
org.jmol.adapter.readers.quantum.
SpartanArchive
org.jmol.g3d.
SphereRenderer
org.jmol.viewer.
StateManager
org.jmol.modelset.
StateScript
org.openscience.jmol.app.jmolpanel.
StatusListener
(implements org.jmol.api.
JmolStatusListener
, org.jmol.api.
JmolSyncInterface
, org.jmol.api.
JSVInterface
)
org.jmol.viewer.
StatusManager
org.jmol.adapter.smarter.
Structure
org.jmol.adapter.readers.cif.
Subsystem
org.jmol.jvxl.readers.
SurfaceGenerator
org.jmol.jvxl.readers.
SurfaceReader
(implements org.jmol.jvxl.api.
VertexDataServer
)
org.jmol.jvxl.readers.
SurfaceFileReader
org.jmol.jvxl.readers.
PolygonFileReader
org.jmol.jvxl.readers.
EfvetReader
org.jmol.jvxl.readers.
NffReader
org.jmol.jvxl.readers.
Pmesh4Reader
org.jmol.jvxl.readers.
PmeshReader
org.jmol.jvxl.readers.
KinemageReader
org.jmol.jvxl.readers.
MsmsReader
org.jmol.jvxl.readers.
ObjReader
org.jmol.jvxl.readers.
VolumeFileReader
org.jmol.jvxl.readers.
ApbsReader
org.jmol.jvxl.readers.
CubeReader
org.jmol.jvxl.readers.
DelPhiBinaryReader
org.jmol.jvxl.readers.
JaguarReader
org.jmol.jvxl.readers.
JvxlXmlReader
org.jmol.jvxl.readers.
JvxlReader
org.jmol.jvxl.readers.
MapFileReader
org.jmol.jvxl.readers.
Dsn6BinaryReader
org.jmol.jvxl.readers.
MrcBinaryReader
org.jmol.jvxl.readers.
PyMOLMeshReader
org.jmol.jvxl.readers.
XplorReader
org.jmol.jvxl.readers.
PeriodicVolumeFileReader
org.jmol.jvxl.readers.
CastepDensityReader
org.jmol.jvxl.readers.
VaspChgcarReader
org.jmol.jvxl.readers.
PltFormattedReader
org.jmol.jvxl.readers.
UhbdReader
org.jmol.jvxl.readers.
XsfReader
org.jmol.jvxl.readers.
VolumeDataReader
org.jmol.jvxl.readers.
AtomDataReader
org.jmol.jvxl.readers.
AtomPropertyMapper
org.jmol.jvxl.readers.
IsoFxyReader
org.jmol.jvxl.readers.
IsoFxyzReader
org.jmol.jvxl.readers.
IsoIntersectReader
org.jmol.jvxl.readers.
IsoMepReader
org.jmol.jvxl.readers.
IsoMlpReader
org.jmol.jvxl.readers.
IsoMOReader
org.jmol.jvxl.readers.
IsoPlaneReader
org.jmol.jvxl.readers.
IsoSolventReader
org.jmol.jvxl.readers.
IsoShapeReader
org.openscience.jmol.app.surfacetool.
SurfaceStatus
org.openscience.jmol.app.surfacetool.
SurfaceTool
org.jmol.script.
SV.Sort
(implements java.util.Comparator<T>)
org.jmol.symmetry.
Symmetry
(implements org.jmol.api.
SymmetryInterface
)
org.jmol.symmetry.
SymmetryDesc
org.jmol.symmetry.
SymmetryInfo
org.jmol.script.
T
org.jmol.script.
ContextToken
org.jmol.script.
SV
(implements javajs.api.JSONEncodable)
javajs.util.T3 (implements javajs.api.JSONEncodable, java.io.Serializable)
org.jmol.util.
MeshCapper.CapVertex
(implements java.lang.Cloneable, java.util.Comparator<T>)
javajs.util.P3
org.jmol.adapter.smarter.
Atom
(implements java.lang.Cloneable)
org.jmol.jvxl.readers.
IsoSolventReader.Edge
org.jmol.jvxl.calc.
MarchingSquares.ContourVertex
org.jmol.util.
Point3fi
(implements java.lang.Cloneable)
org.jmol.modelset.
Atom
(implements org.jmol.util.
BNode
)
org.jmol.quantum.
QMAtom
org.jmol.smiles.
SmilesAtom
(implements org.jmol.util.
BNode
)
javajs.util.V3
org.jmol.util.
Vibration
org.jmol.util.
ModulationSet
(implements org.jmol.api.
JmolModulationSet
)
javajs.util.T3i (implements java.io.Serializable)
javajs.util.P3i
org.jmol.g3d.
TextString
(implements java.util.Comparator<T>)
org.jmol.util.
TempArray
org.jmol.util.
Tensor
org.jmol.g3d.
TextRenderer
org.jmol.render.
TextRenderer
java.lang.Thread (implements java.lang.Runnable)
org.openscience.jmol.app.jmolpanel.console.
AppConsole.ExecuteCommandThread
org.jmol.applet.
ClassPreloader
org.openscience.jmol.app.
InputScannerThread
org.jmol.thread.
JmolThread
org.jmol.thread.
AnimationThread
org.jmol.script.
CommandWatcherThread
org.jmol.script.
FileLoadThread
org.jmol.thread.
HoverWatcherThread
org.jmol.minimize.
MinimizationThread
org.jmol.thread.
MoveToThread
org.jmol.navigate.
Navigator
(implements org.jmol.api.
JmolNavigatorInterface
)
org.jmol.script.
ScriptDelayThread
org.jmol.script.
ScriptQueueThread
org.jmol.thread.
SpinThread
org.jmol.thread.
TimeoutThread
org.jmol.thread.
VibrationThread
org.jmol.applet.
TickerThread
org.jmol.applet.
WrappedAppletLoader
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
org.jmol.smiles.
InvalidSmilesException
java.io.IOException
org.jmol.viewer.
JmolAsyncException
org.jmol.script.
ScriptException
org.jmol.script.
ScriptInterruption
org.jmol.modelset.
TickInfo
javax.swing.TransferHandler (implements java.io.Serializable)
org.openscience.jmol.app.webexport.
ArrayListTransferHandler
org.jmol.viewer.
TransformManager
org.jmol.viewer.
TransformManager4D
org.jmol.util.
TriangleData
(implements org.jmol.util.
Triangulator
)
org.jmol.jvxl.calc.
MarchingCubes
org.openscience.jvxl.simplewriter.
SimpleMarchingCubes
org.jmol.g3d.
TriangleRenderer
(implements org.jmol.g3d.
G3DRenderer
)
org.jmol.multitouch.sparshui.
TwoPointGesture
(implements com.sparshui.gestures.Gesture)
org.jmol.util.
Txt
org.jmol.minimize.
Util
org.jmol.adapter.readers.molxyz.
V3000Rdr
org.jmol.jvxl.data.
VolumeData
(implements org.jmol.api.
VolumeDataInterface
)
org.openscience.jvxl.simplewriter.
VoxelDataCreator
org.jmol.smiles.
VTemp
org.openscience.jmol.app.webexport.
Widgets
org.openscience.jmol.app.webexport.
Widgets.Widget
org.openscience.jmol.app.webexport.
Widgets.AnimationWidget
org.openscience.jmol.app.webexport.
Widgets.BackgroundColorWidget
org.openscience.jmol.app.webexport.
Widgets.ConsoleWidget
org.openscience.jmol.app.webexport.
Widgets.DownLoadWidget
org.openscience.jmol.app.webexport.
Widgets.SpinOnWidget
org.openscience.jmol.app.webexport.
Widgets.StereoViewWidget
java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
org.openscience.chimetojmol.
ChimeToJmol.ApplicationCloser
org.openscience.jmol.app.jmolpanel.
JmolPanel.AppCloser
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementListWindowListener
org.openscience.jmol.app.jmolpanel.
PovrayDialog.PovrayWindowListener
org.openscience.jmol.app.jmolpanel.
Splash.WindowListener
org.jmol.jvxl.readers.
XmlReader
org.jmol.adapter.smarter.
XtalSymmetry
Interface Hierarchy
org.jmol.atomdata.
AtomDataServer
org.jmol.api.
AtomIndexIterator
org.jmol.modelset.
BondIterator
org.jmol.api.
DSSPInterface
org.openscience.jmol.app.jmolpanel.console.
EnterListener
org.jmol.g3d.
G3DRenderer
org.jmol.api.
GenericGraphics
org.jmol.console.
GenericTextArea
org.jmol.api.
JmolAbstractButton
org.jmol.api.
JmolAdapterAtomIterator
org.jmol.api.
JmolAnnotationParser
org.jmol.api.
JmolAppAPI
org.jmol.api.
JmolAppConsoleInterface
org.jmol.api.
JmolBioResolver
org.jmol.api.
JmolCallbackListener
org.jmol.api.
JmolStatusListener
org.jmol.script.
JmolCmdExtension
org.jmol.api.
JmolDataManager
org.jmol.api.
JmolDialogInterface
org.jmol.api.
JmolEnvCalc
org.jmol.awt.
JmolFrame
org.jmol.api.
JmolGestureServerInterface
org.jmol.api.
JmolGraphicsInterface
org.jmol.api.
JmolRendererInterface
org.jmol.api.
JmolJDXMOLParser
org.jmol.api.
JmolJDXMOLReader
org.jmol.api.
JmolJSpecView
org.jmol.script.
JmolMathExtension
org.jmol.api.
JmolMeasurementClient
org.jmol.api.
JmolModulationSet
org.jmol.api.
JmolMovieCreatorInterface
org.jmol.multitouch.
JmolMultiTouchAdapter
org.jmol.multitouch.
JmolMultiTouchClient
org.jmol.api.
JmolNMRInterface
org.jmol.api.
JmolParallelProcessor
org.jmol.api.
JmolPatternMatcher
org.jmol.api.
JmolPdfCreatorInterface
org.jmol.api.
JmolPropertyManager
org.jmol.api.
JmolRepaintManager
org.jmol.api.
JmolSceneGenerator
org.jmol.api.
JmolScriptEditorInterface
org.jmol.api.
JmolScriptEvaluator
org.jmol.api.
JmolScriptFunction
org.jmol.api.
JmolScriptManager
org.jmol.api.
JmolSelectionListener
org.jmol.script.
JmolSmilesExtension
org.jmol.api.
JmolSyncInterface
org.jmol.api.
JmolAppletInterface
org.jmol.api.
JmolTouchSimulatorInterface
org.jmol.adapter.readers.xml.
JmolXmlHandler
org.jmol.api.
JmolZipUtilities
org.openscience.jmol.app.jsonkiosk.
JsonNioClient
org.openscience.jmol.app.jsonkiosk.
JsonNioServer
org.jmol.api.
JSVInterface
org.jmol.util.
LoggerInterface
org.jmol.api.
MepCalculationInterface
org.jmol.api.
MinimizerInterface
org.jmol.api.
MOCalculationInterface
org.jmol.api.
QuantumPlaneCalculationInterface
org.jmol.adapter.smarter.
MSInterface
org.jmol.util.
Node
org.jmol.util.
BNode
org.jmol.popup.
PopupHelper
org.jmol.api.
PymolAtomReader
java.lang.Runnable
org.jmol.api.
JmolDomReaderInterface
org.jmol.api.
JmolFilesReaderInterface
org.jmol.api.
JmolNavigatorInterface
org.jmol.api.
SmilesMatcherInterface
org.openscience.jmol.app.
SplashInterface
org.jmol.api.
SymmetryInterface
org.jmol.api.
Translator
org.jmol.util.
Triangulator
org.jmol.jvxl.api.
VertexDataServer
org.jmol.jvxl.api.
MeshDataServer
org.jmol.api.
VolumeDataInterface
org.jmol.applet.
WrappedApplet
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.jmol.atomdata.
RadiusData.EnumType
org.jmol.c.
STR
org.jmol.c.
HB
org.jmol.c.
CBK
org.jmol.c.
FIL
org.jmol.c.
VDW
org.jmol.c.
PAL
org.jmol.c.
STER
org.jmol.modelsetbio.
AlphaPolymer.Code
org.jmol.shapespecial.
Draw.EnumDrawType
org.jmol.util.
Edge.EnumBondOrder
org.jmol.viewer.
Viewer.ACCESS
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