Interface | Description |
---|---|
BNode | |
LoggerInterface |
Interface used for the logging mechanism.
|
Node | |
Triangulator |
Class | Description |
---|---|
BoxInfo | |
BSUtil | |
C |
Note: Color table is now in javajs/util/CU.java
|
ColorEncoder | |
CommandHistory |
Implements a queue for a bash-like command history.
|
ContactPair | |
DefaultLogger |
Default implementation of the logger.
|
Edge | |
EigenSort |
sort from smallest to largest absolute
|
Elements | |
Escape | |
GData | |
GenericApplet |
A collection of all methods necessary for initialization of and communication with the applet,
whether it be JavaScript or Java.
|
Geodesic |
J2SRequireImport is needed because we use ArrayUtil in a static method
|
Int2IntHash | |
Int2IntHashEntry | |
JmolMolecule |
an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom
for use in finding molecules in models and SMILES strings
|
Logger |
Logger mechanism.
|
MeshCapper |
A class to properly cap a convoluted, closed slice of an isosurface
inspired by: Computational Geometry: Algorithms and Applications Mark de
Berg, Marc van Kreveld, Mark Overmars, and Otfried Schwarzkopf
Springer-Verlag, Berlin Heidelberg 1997 Chapter 3.
|
MeshSlicer | |
MeshSurface | |
Modulation |
A class to allow for more complex vibrations and associated phenomena, such
as modulated crystals, including Fourier series, Crenel functions, and
sawtooth functions
|
ModulationSet |
A class to group a set of modulations for an atom as a "vibration" Extends V3
so that it will be a displacement, and its value will be an occupancy
|
Normix |
Provides quantization of normalized vectors so that shading for
lighting calculations can be handled by a simple index lookup
|
Parser | |
PatternMatcher | |
Point3fi |
the Point3fi class allows storage of critical information involving
an atom, picked bond, or measurement point, including:
xyz position
screen position
screen radius (-1 for a simple point)
index (for atoms or for an associated bond that has be picked)
associated modelIndex (for measurement points)
|
Rectangle | |
Rgb16 | |
Shader |
All functions.
|
SimpleUnitCell |
general-purpose simple unit cell for calculations
and as a super-class of unitcell, which is only part of Symmetry
allows one-dimensional (polymer) and two-dimensional (slab)
periodicity
|
TempArray | |
Tensor | |
TriangleData | |
Txt | |
Vibration |
A class to allow for more complex vibrations and associated
phenomena, such as modulated crystals.
|
Enum | Description |
---|---|
Edge.EnumBondOrder |