public class HBond extends Bond
Modifier and Type | Field and Description |
---|---|
(package private) float |
energy |
private static double |
QConst |
atom1, atom2, colix, mad, myVisibilityFlag, shapeVisibilityFlags
argbsHbondType, BOND_AROMATIC, BOND_AROMATIC_DOUBLE, BOND_AROMATIC_MASK, BOND_AROMATIC_SINGLE, BOND_COVALENT_DOUBLE, BOND_COVALENT_MASK, BOND_COVALENT_QUADRUPLE, BOND_COVALENT_SINGLE, BOND_COVALENT_TRIPLE, BOND_H_CALC, BOND_H_CALC_MASK, BOND_H_MINUS_3, BOND_H_MINUS_4, BOND_H_NUCLEOTIDE, BOND_H_PLUS_2, BOND_H_PLUS_3, BOND_H_PLUS_4, BOND_H_PLUS_5, BOND_H_REGULAR, BOND_HBOND_SHIFT, BOND_HYDROGEN_MASK, BOND_NEW, BOND_ORDER_ANY, BOND_ORDER_NULL, BOND_ORDER_UNSPECIFIED, BOND_PARTIAL_MASK, BOND_PARTIAL01, BOND_PARTIAL12, BOND_PARTIAL23, BOND_PARTIAL32, BOND_PYMOL_MULT, BOND_PYMOL_SINGLE, BOND_STEREO_FAR, BOND_STEREO_MASK, BOND_STEREO_NEAR, BOND_STRUT, BOND_SULFUR_MASK, FLAG_AROMATIC_DEFINED, FLAG_AROMATIC_DOUBLE, FLAG_AROMATIC_STRICT, FLAG_IGNORE_STEREOCHEMISTRY, FLAG_NO_AROMATIC, index, order
Constructor and Description |
---|
HBond(Atom atom1,
Atom atom2,
int order,
short mad,
short colix,
float energy) |
Modifier and Type | Method and Description |
---|---|
float |
getEnergy() |
static int |
getEnergy(double distAH,
double distCH,
double distCD,
double distAD) |
deleteAtomReferences, getAtomIndex1, getAtomIndex2, getCovalentOrder, getIdentity, getOtherAtom, getOtherAtomNode, getValence, is, isAromatic, isCovalent, isHydrogen, isOrderH, isPartial, isPymolStyle, isStereo, setMad, setOrder, setShapeVisibility, setTranslucent, toString
getArgbHbondType, getBondOrderFromFloat, getBondOrderFromString, getBondOrderNameFromOrder, getBondOrderNumberFromOrder, getCmlBondOrder, getCovalentBondOrder, getPartialBondDotted, getPartialBondOrder
float energy
private static final double QConst