libSBML Python API  5.11.0
Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 1234567]
 C_object
 Clibsbml.ASTNodeListClass for managing lists of ASTNode objects
 Clibsbml.ConversionOption A single configuration setting for an SBML converter
 Clibsbml.ConversionProperties Set of configuration option values for a converter
 Clibsbml.CVTerm A MIRIAM-compliant controlled vocabulary term
 Clibsbml.CVTermListClass for managing lists of CVTerm objects
 Clibsbml.Date A MIRIAM-compliant date representation
 Clibsbml.DateListClass for managing lists of Date objects
 Clibsbml.ElementFilter Base class for filter functions
 Clibsbml.float_arrayProxy of C++ float_array class
 Clibsbml.int_arrayProxy of C++ int_array class
 Clibsbml.L3ParserSettings Controls the behavior of the Level 3 formula parser
 Clibsbml.ModelCreator MIRIAM-compliant data about a model's creator
 Clibsbml.ModelCreatorListClass for managing lists of ModelCreator objects
 Clibsbml.ModelHistory MIRIAM-compliant data about a model's history
 Clibsbml.ostreamWrapper class for the C++ standard stream ostream
 Clibsbml.ostringstreamWrapper class for the C++ standard file stream ofstream
 Clibsbml.RDFAnnotationParser MIRIAM-compliant RDF annotation reader/writer
 Clibsbml.RelAbsVectorThis class represents a pair of numerical values where one value represents an absolute value and the other value is a relative value in percent
 Clibsbml.SBase SBML's SBase class, base class of most SBML objects
 Clibsbml.Associationfbc Proposed representation of gene associations
 Clibsbml.BoundingBoxlayout A bounding box for an item in a diagram
 Clibsbml.ColorDefinitionLibSBML implementation for the ColorDefinition construct from the SBML render extension
 Clibsbml.Compartment An SBML compartment, where species are located
 Clibsbml.CompartmentType A compartment type in SBML Level 2
 Clibsbml.Constraint An SBML constraint, for stating validity assumptions
 Clibsbml.Curvelayout A curve connecting elements in a diagram
 Clibsbml.DefaultTermqual The default result of a Transition
 Clibsbml.Delay A delay on the time of execution of an SBML event
 Clibsbml.Dimensionslayout Spatial dimensions of a 2D or 3D shape
 Clibsbml.Event A discontinuous SBML event
 Clibsbml.EventAssignment An assignment to a variable by an SBML event
 Clibsbml.FluxBoundfbc Max or min value for a reaction flux
 Clibsbml.FluxObjectivefbc An objective function for a flux
 Clibsbml.FunctionDefinition A user-defined function in an SBML model
 Clibsbml.FunctionTermqual A function term
 Clibsbml.GeneAssociationfbc Proposed annotation for gene associations
 Clibsbml.GradientStopLibSBML implementation of the gradient stop concept from the
 Clibsbml.GraphicalObjectlayout Base class of objects that store layouts
 Clibsbml.CompartmentGlyphlayout A glyph for an SBML compartment
 Clibsbml.GeneralGlyphlayout A glyph for miscellaneous items
 Clibsbml.ReactionGlyphlayout A glyph for an SBML reaction
 Clibsbml.ReferenceGlyphlayout Connection between an object and a glyph
 Clibsbml.SpeciesGlyphlayout A glyph for an SBML species
 Clibsbml.SpeciesReferenceGlyphlayout A glyph for an SBML species reference
 Clibsbml.TextGlyphlayout A glyph for a text label
 Clibsbml.InitialAssignment An SBML initial assignment, evaluated once only
 Clibsbml.Inputqual The input to a QualitativeSpecies
 Clibsbml.KineticLaw The rate expression for an SBML reaction
 Clibsbml.Layoutlayout The layout of a diagram of an SBML model
 Clibsbml.LineSegmentlayout Representation of a line
 Clibsbml.CubicBezierlayout A Cubic Bézier smooth curve
 Clibsbml.ListOf Parent class for libSBML's 'ListOfXYZ' classes
 Clibsbml.ListOfColorDefinitionsLibSBML implementation for a container which holds zero or more ColorDefinition objects
 Clibsbml.ListOfCompartmentGlyphslayout A list of CompartmentGlyph objects
 Clibsbml.ListOfCompartments A list of Compartment objects
 Clibsbml.ListOfCompartmentTypes A list of CompartmentType objects
 Clibsbml.ListOfConstraints A list of Constraint objects
 Clibsbml.ListOfCurveElementsA container to store curve elements (RenderPoint and RenderCubicBezier)
 Clibsbml.ListOfDeletionscomp A list of Deletion objects
 Clibsbml.ListOfDrawablesContainer class that stores objects derived from Transformation2D
 Clibsbml.ListOfEventAssignments A list of EventAssignment objects
 Clibsbml.ListOfEvents A list of Event objects
 Clibsbml.ListOfExternalModelDefinitionscomp A list of ExternalModelDefinition objects
 Clibsbml.ListOfFluxBoundsfbc A list of FluxBound objects
 Clibsbml.ListOfFluxObjectivesfbc A list of FluxObjectives
 Clibsbml.ListOfFunctionDefinitions A list of FunctionDefinition objects
 Clibsbml.ListOfFunctionTermsqual A list of FunctionTerm objects
 Clibsbml.ListOfGeneAssociationsfbc A list of GeneAssociation objects
 Clibsbml.ListOfGlobalRenderInformationContainer class that stores GlobalRenderInformation objects
 Clibsbml.ListOfGlobalStylesListOfGlobalStyles is the container class that stores GlobalStyles in GlobalRenderInformation objects
 Clibsbml.ListOfGradientDefinitionsContainer class that holds a list of gradient definitions
 Clibsbml.ListOfGradientStopsContainer that holds zero or more GradientStop objects
 Clibsbml.ListOfGraphicalObjectslayout A list of GraphicalObject objects
 Clibsbml.ListOfInitialAssignments A list of InitialAssignment objects
 Clibsbml.ListOfInputsqual A list of Input objects
 Clibsbml.ListOfLayoutslayout A list of Layout objects
 Clibsbml.ListOfLineEndingsContainer class to store LineEnding objects
 Clibsbml.ListOfLineSegmentslayout A list of LineSegment objects
 Clibsbml.ListOfLocalRenderInformationContainer class that stores LocalRenderInformation objects
 Clibsbml.ListOfLocalStylesListOfLocalStyles is the container class that stores LocalStyles in LocalRenderInformation objects
 Clibsbml.ListOfModelDefinitionscomp A list of ModelDefinition objects
 Clibsbml.ListOfObjectivesfbc A list of Objective objects
 Clibsbml.ListOfOutputsqual A list of Output objects
 Clibsbml.ListOfParameters A list of Parameter objects
 Clibsbml.ListOfLocalParameters A list of LocalParameter objects
 Clibsbml.ListOfPortscomp A list of Port objects
 Clibsbml.ListOfQualitativeSpeciesqual A list of QualitativeSpecies objects
 Clibsbml.ListOfReactionGlyphslayout A list of ReactionGlyph objects
 Clibsbml.ListOfReactions A list of Reaction objects
 Clibsbml.ListOfReferenceGlyphslayout A list of ReferenceGlyph objects
 Clibsbml.ListOfReplacedElementscomp A list of ReplacedElement objects
 Clibsbml.ListOfRules A list of Rule objects
 Clibsbml.ListOfSpecies A list of Species objects
 Clibsbml.ListOfSpeciesGlyphslayout A list of SpeciesGlyph objects
 Clibsbml.ListOfSpeciesReferenceGlyphslayout A list of SpeciesReferenceGlyph objects
 Clibsbml.ListOfSpeciesReferences A list of SpeciesReference objects
 Clibsbml.ListOfSpeciesTypes A list of SpeciesType objects
 Clibsbml.ListOfSubmodelscomp A list of Submodel objects
 Clibsbml.ListOfTextGlyphslayout A list of TextGlyph objects
 Clibsbml.ListOfTransitionsqual A list of Transition objects
 Clibsbml.ListOfUnitDefinitions A list of UnitDefinition objects
 Clibsbml.ListOfUnits A list of Unit objects
 Clibsbml.Model An SBML model
 Clibsbml.ModelDefinitioncomp A model used in model composition
 Clibsbml.Objectivefbc An objective function
 Clibsbml.Outputqual The output from a QualitativeSpecies
 Clibsbml.Parameter An SBML parameter: a named symbol with a value
 Clibsbml.LocalParameter A parameter inside an SBML reaction definition
 Clibsbml.Pointlayout Representation of a point
 Clibsbml.Priority The priority of execution of an SBML event
 Clibsbml.QualitativeSpeciesqual Extension of Species
 Clibsbml.Reaction An SBML reaction between species in an SBML model
 Clibsbml.RenderInformationBaseAbstract base class for local and global render information
 Clibsbml.GlobalRenderInformationGlobalRenderInformation is the render information stored in the ListOfLayouts
 Clibsbml.LocalRenderInformationLocalRenderInformation is the render information stored in Layouts
 Clibsbml.RenderPointRepresents a point where the coordinates can be made up of absolute as well as relative values (
 Clibsbml.RenderCubicBezierCubicBezier representation for RenderCurve objects and Polygon objects
 Clibsbml.Rule Parent class for SBML rules in libSBML
 Clibsbml.AlgebraicRule An SBML algebraic rule representing 0 = f(W)
 Clibsbml.AssignmentRule An SBML assignment rule representing x = f(Y)
 Clibsbml.RateRule An SBML rate rule representing dx/dt = f(Y)
 Clibsbml.SBMLDocument Overall SBML container object
 Clibsbml.SimpleSpeciesReference Abstract class for references to species in reactions
 Clibsbml.ModifierSpeciesReference A reference to an SBML modifier species
 Clibsbml.SpeciesReference A reference to an SBML species in a reaction
 Clibsbml.Species An SBML species – a pool of entities
 Clibsbml.SpeciesType A species type in SBML Level 2
 Clibsbml.StoichiometryMath Stochiometry expressions in SBML Level 2 reactions
 Clibsbml.StyleAbstract base class for local and global styles
 Clibsbml.GlobalStyleImplementation of the GlobalStyle concept of the SBML render extension
 Clibsbml.LocalStyleImplementation of the LocalStyle concept of the SBML render extension
 Clibsbml.TransformationImplementation of a 3D transformation matrix
 Clibsbml.Transformation2DImplementation of a 2D transformation matrix
 Clibsbml.GraphicalPrimitive1DBase class for all graphical primitives which implements all 1D attributes
 Clibsbml.GraphicalPrimitive2DConstructor which creates a GraphicalPrimitive2D
 Clibsbml.EllipseGraphical representation of an ellipse from the SBML render extension
 Clibsbml.LineEndingLineEnding is a decoration element for the start and/or end of curves in the SBML render extension, e.g
 Clibsbml.PolygonClass representing a polygon from the SBML render extension
 Clibsbml.RectangleProxy of C++ Rectangle class
 Clibsbml.RenderGroupThe RenderGroup concept from the SBML render extension is used to group graphical primitives together to create composite representations from simple primitives
 Clibsbml.RenderCurveImplementation of the Curve concept from the SBML render extension
 Clibsbml.TextInstantiates a new Text object with the given id and position offset
 Clibsbml.ImageImplementation of the Image concept from the SBML render extension
 Clibsbml.Transitionqual A transition of a QualitativeSpecies
 Clibsbml.Trigger The trigger expression for an SBML event
 Clibsbml.Unit A single unit referenced in an SBML unit definition
 Clibsbml.UnitDefinition A definition of a unit used in an SBML model
 Clibsbml.SBaseListClass for managing lists of SBase objects
 Clibsbml.SBasePlugin Base class for extending SBML objects in packages
 Clibsbml.CompSBasePlugincomp Extension of SBase
 Clibsbml.CompModelPlugincomp Extension of Model
 Clibsbml.FbcModelPluginfbc Extension of Model
 Clibsbml.FbcSpeciesPluginfbc Extension of Species
 Clibsbml.LayoutModelPluginlayout Extension of Model
 Clibsbml.LayoutSpeciesReferencePluginlayout Extension of SpeciesReference
 Clibsbml.QualModelPluginqual Extension of Model
 Clibsbml.RenderGraphicalObjectPluginProxy of C++ RenderGraphicalObjectPlugin class
 Clibsbml.RenderLayoutPluginProxy of C++ RenderLayoutPlugin class
 Clibsbml.RenderListOfLayoutsPluginProxy of C++ RenderListOfLayoutsPlugin class
 Clibsbml.SBMLDocumentPlugin Base class for extending SBMLDocument in packages
 Clibsbml.CompSBMLDocumentPlugincomp Extension of SBMLDocument
 Clibsbml.SBMLConverter Base class for SBML converters
 Clibsbml.CobraToFbcConverterfbc COBRA to SBML Level 3 'fbc' converter
 Clibsbml.CompFlatteningConvertercomp 'Flattens' a model, removing composition
 Clibsbml.FbcToCobraConverterfbc SBML Level 3 'fbc' to COBRA converter
 Clibsbml.SBMLFunctionDefinitionConverter Converter to expand user-defined functions in-line
 Clibsbml.SBMLIdConverter Converter for replacing object identifiers
 Clibsbml.SBMLInferUnitsConverter Converter for inferring and setting parameter units
 Clibsbml.SBMLInitialAssignmentConverter Converter that removes SBML initial assignments
 Clibsbml.SBMLLevelVersionConverter Whole-document SBML Level/Version converter
 Clibsbml.SBMLLocalParameterConverter Converter to turn local parameters into global ones
 Clibsbml.SBMLReactionConverter Converter to replace reactions with SBML rate rules
 Clibsbml.SBMLRuleConverter Converter that sorts SBML rules and assignments
 Clibsbml.SBMLStripPackageConverter Converter that removes SBML Level 3 packages
 Clibsbml.SBMLUnitsConverter Converts a model's existing units to SI units
 Clibsbml.SBMLConverterRegistry Registry of all libSBML SBML converters
 Clibsbml.SBMLExtension Core class for SBML Level 3 package plug-ins
 Clibsbml.CompExtensioncomp Base extension class for the package
 Clibsbml.FbcExtensionfbc Base extension class for the package
 Clibsbml.LayoutExtensionlayout Base extension class for the package
 Clibsbml.QualExtensionqual Base extension class for the package
 Clibsbml.RenderExtensionProxy of C++ RenderExtension class
 Clibsbml.SBMLExtensionException Exception used by package extensions
 Clibsbml.SBMLExtensionRegistry Registry where package extensions are registered
 Clibsbml.SBMLNamespaces Set of SBML Level + Version + namespace triples
 Clibsbml.CompPkgNamespacescomp SBMLNamespaces extension for the package
 Clibsbml.FbcPkgNamespacesfbc SBMLNamespaces extension for the package
 Clibsbml.LayoutPkgNamespaceslayout SBMLNamespaces extension for the package
 Clibsbml.QualPkgNamespacesqual SBMLNamespaces extension for the package
 Clibsbml.RenderPkgNamespaces Set of SBML Level + Version + namespace triples
 Clibsbml.SBMLNamespacesListClass for managing lists of SBMLNamespaces objects
 Clibsbml.SBMLReader File and text-string SBML reader
 Clibsbml.SBMLResolvercomp Base class for SBML resolvers
 Clibsbml.SBMLFileResolvercomp Resolves documents stored on a file system
 Clibsbml.SBMLResolverRegistrycomp Registry of all SBML resolvers
 Clibsbml.SBMLUricomp Utility class for handling URIs
 Clibsbml.SBMLValidator Base class for SBML validators
 Clibsbml.SBMLWriter File and text-string SBML writer
 Clibsbml.SBO Facilities for using the Systems Biology Ontology
 Clibsbml.StringSetProxy of C++ std::set<(std::string)> class
 Clibsbml.SyntaxChecker Methods for checking the validity of SBML identifiers
 Clibsbml.XMLAttributes A list of attributes on an XML element
 Clibsbml.XMLError XML-level errors, warnings and other diagnostics
 Clibsbml.SBMLError An error, warning or other diagnostic
 Clibsbml.XMLErrorLog Log of diagnostics reported during XML processing
 Clibsbml.SBMLErrorLog Log of diagnostics reported during processing
 Clibsbml.XMLInputStream An interface to an XML input stream
 Clibsbml.XMLNamespaces An XML Namespace
 Clibsbml.XMLOutputStream Interface to an XML output stream
 Clibsbml.XMLOwningOutputFileStreamProxy of C++ XMLOwningOutputFileStream class
 Clibsbml.XMLOwningOutputStringStreamProxy of C++ XMLOwningOutputStringStream class
 Clibsbml.XMLToken A token in an XML stream
 Clibsbml.XMLNode A node in libSBML's XML document tree
 Clibsbml.XMLTriple A qualified XML name
 CASTBase
 Clibsbml.ASTNode Abstract Syntax Trees for mathematical expressions
 CCompBase
 Clibsbml.ExternalModelDefinitioncomp A reference to an externally-defined model
 Clibsbml.SBaseRefcomp Base class for references to objects
 Clibsbml.Deletioncomp Deletion of an object from a submodel
 Clibsbml.Portcomp An interface to be used in composition
 Clibsbml.Replacingcomp Convenience class
 Clibsbml.ReplacedBycomp Indicates an object replaced by another
 Clibsbml.ReplacedElementcomp Indicates an object replaces another
 Clibsbml.Submodelcomp A model instance inside another model
 CGradientBase
 Clibsbml.LinearGradientRepresentation of a linear gradient object from the SBML render extension
 Clibsbml.RadialGradientRepresentation of a radial gradient object from the SBML render extension
 CSBMLReader File and text-string SBML reader
 CSBMLWriter File and text-string SBML writer
 Ctype
 Clibsbml.AutoPropertyAuto-detect Python class getX/setX methods