libSBML Python API
5.11.0
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▼Nlibsbml | |
CAlgebraicRule | An SBML algebraic rule representing 0 = f(W) |
CAssignmentRule | An SBML assignment rule representing x = f(Y) |
CAssociation | fbc Proposed representation of gene associations |
CASTNode | Abstract Syntax Trees for mathematical expressions |
CASTNodeList | Class for managing lists of ASTNode objects |
CAutoProperty | Auto-detect Python class getX/setX methods |
CBoundingBox | layout A bounding box for an item in a diagram |
CCobraToFbcConverter | fbc COBRA to SBML Level 3 'fbc' converter |
CColorDefinition | LibSBML implementation for the ColorDefinition construct from the SBML render extension |
CCompartment | An SBML compartment, where species are located |
CCompartmentGlyph | layout A glyph for an SBML compartment |
CCompartmentType | A compartment type in SBML Level 2 |
CCompExtension | comp Base extension class for the package |
CCompFlatteningConverter | comp 'Flattens' a model, removing composition |
CCompModelPlugin | comp Extension of Model |
CCompPkgNamespaces | comp SBMLNamespaces extension for the package |
CCompSBasePlugin | comp Extension of SBase |
CCompSBMLDocumentPlugin | comp Extension of SBMLDocument |
CConstraint | An SBML constraint, for stating validity assumptions |
CConversionOption | A single configuration setting for an SBML converter |
CConversionProperties | Set of configuration option values for a converter |
CCubicBezier | layout A Cubic Bézier smooth curve |
CCurve | layout A curve connecting elements in a diagram |
CCVTerm | A MIRIAM-compliant controlled vocabulary term |
CCVTermList | Class for managing lists of CVTerm objects |
CDate | A MIRIAM-compliant date representation |
CDateList | Class for managing lists of Date objects |
CDefaultTerm | qual The default result of a Transition |
CDelay | A delay on the time of execution of an SBML event |
CDeletion | comp Deletion of an object from a submodel |
CDimensions | layout Spatial dimensions of a 2D or 3D shape |
CElementFilter | Base class for filter functions |
CEllipse | Graphical representation of an ellipse from the SBML render extension |
CEvent | A discontinuous SBML event |
CEventAssignment | An assignment to a variable by an SBML event |
CExternalModelDefinition | comp A reference to an externally-defined model |
CFbcExtension | fbc Base extension class for the package |
CFbcModelPlugin | fbc Extension of Model |
CFbcPkgNamespaces | fbc SBMLNamespaces extension for the package |
CFbcSpeciesPlugin | fbc Extension of Species |
CFbcToCobraConverter | fbc SBML Level 3 'fbc' to COBRA converter |
Cfloat_array | Proxy of C++ float_array class |
CFluxBound | fbc Max or min value for a reaction flux |
CFluxObjective | fbc An objective function for a flux |
CFunctionDefinition | A user-defined function in an SBML model |
CFunctionTerm | qual A function term |
CGeneAssociation | fbc Proposed annotation for gene associations |
CGeneralGlyph | layout A glyph for miscellaneous items |
CGlobalRenderInformation | GlobalRenderInformation is the render information stored in the ListOfLayouts |
CGlobalStyle | Implementation of the GlobalStyle concept of the SBML render extension |
CGradientStop | LibSBML implementation of the gradient stop concept from the |
CGraphicalObject | layout Base class of objects that store layouts |
CGraphicalPrimitive1D | Base class for all graphical primitives which implements all 1D attributes |
CGraphicalPrimitive2D | Constructor which creates a GraphicalPrimitive2D |
CImage | Implementation of the Image concept from the SBML render extension |
CInitialAssignment | An SBML initial assignment, evaluated once only |
CInput | qual The input to a QualitativeSpecies |
Cint_array | Proxy of C++ int_array class |
CKineticLaw | The rate expression for an SBML reaction |
CL3ParserSettings | Controls the behavior of the Level 3 formula parser |
CLayout | layout The layout of a diagram of an SBML model |
CLayoutExtension | layout Base extension class for the package |
CLayoutModelPlugin | layout Extension of Model |
CLayoutPkgNamespaces | layout SBMLNamespaces extension for the package |
CLayoutSpeciesReferencePlugin | layout Extension of SpeciesReference |
CLinearGradient | Representation of a linear gradient object from the SBML render extension |
CLineEnding | LineEnding is a decoration element for the start and/or end of curves in the SBML render extension, e.g |
CLineSegment | layout Representation of a line |
CListOf | Parent class for libSBML's 'ListOfXYZ' classes |
CListOfColorDefinitions | LibSBML implementation for a container which holds zero or more ColorDefinition objects |
CListOfCompartmentGlyphs | layout A list of CompartmentGlyph objects |
CListOfCompartments | A list of Compartment objects |
CListOfCompartmentTypes | A list of CompartmentType objects |
CListOfConstraints | A list of Constraint objects |
CListOfCurveElements | A container to store curve elements (RenderPoint and RenderCubicBezier) |
CListOfDeletions | comp A list of Deletion objects |
CListOfDrawables | Container class that stores objects derived from Transformation2D |
CListOfEventAssignments | A list of EventAssignment objects |
CListOfEvents | A list of Event objects |
CListOfExternalModelDefinitions | comp A list of ExternalModelDefinition objects |
CListOfFluxBounds | fbc A list of FluxBound objects |
CListOfFluxObjectives | fbc A list of FluxObjectives |
CListOfFunctionDefinitions | A list of FunctionDefinition objects |
CListOfFunctionTerms | qual A list of FunctionTerm objects |
CListOfGeneAssociations | fbc A list of GeneAssociation objects |
CListOfGlobalRenderInformation | Container class that stores GlobalRenderInformation objects |
CListOfGlobalStyles | ListOfGlobalStyles is the container class that stores GlobalStyles in GlobalRenderInformation objects |
CListOfGradientDefinitions | Container class that holds a list of gradient definitions |
CListOfGradientStops | Container that holds zero or more GradientStop objects |
CListOfGraphicalObjects | layout A list of GraphicalObject objects |
CListOfInitialAssignments | A list of InitialAssignment objects |
CListOfInputs | qual A list of Input objects |
CListOfLayouts | layout A list of Layout objects |
CListOfLineEndings | Container class to store LineEnding objects |
CListOfLineSegments | layout A list of LineSegment objects |
CListOfLocalParameters | A list of LocalParameter objects |
CListOfLocalRenderInformation | Container class that stores LocalRenderInformation objects |
CListOfLocalStyles | ListOfLocalStyles is the container class that stores LocalStyles in LocalRenderInformation objects |
CListOfModelDefinitions | comp A list of ModelDefinition objects |
CListOfObjectives | fbc A list of Objective objects |
CListOfOutputs | qual A list of Output objects |
CListOfParameters | A list of Parameter objects |
CListOfPorts | comp A list of Port objects |
CListOfQualitativeSpecies | qual A list of QualitativeSpecies objects |
CListOfReactionGlyphs | layout A list of ReactionGlyph objects |
CListOfReactions | A list of Reaction objects |
CListOfReferenceGlyphs | layout A list of ReferenceGlyph objects |
CListOfReplacedElements | comp A list of ReplacedElement objects |
CListOfRules | A list of Rule objects |
CListOfSpecies | A list of Species objects |
CListOfSpeciesGlyphs | layout A list of SpeciesGlyph objects |
CListOfSpeciesReferenceGlyphs | layout A list of SpeciesReferenceGlyph objects |
CListOfSpeciesReferences | A list of SpeciesReference objects |
CListOfSpeciesTypes | A list of SpeciesType objects |
CListOfSubmodels | comp A list of Submodel objects |
CListOfTextGlyphs | layout A list of TextGlyph objects |
CListOfTransitions | qual A list of Transition objects |
CListOfUnitDefinitions | A list of UnitDefinition objects |
CListOfUnits | A list of Unit objects |
CLocalParameter | A parameter inside an SBML reaction definition |
CLocalRenderInformation | LocalRenderInformation is the render information stored in Layouts |
CLocalStyle | Implementation of the LocalStyle concept of the SBML render extension |
CModel | An SBML model |
CModelCreator | MIRIAM-compliant data about a model's creator |
CModelCreatorList | Class for managing lists of ModelCreator objects |
CModelDefinition | comp A model used in model composition |
CModelHistory | MIRIAM-compliant data about a model's history |
CModifierSpeciesReference | A reference to an SBML modifier species |
CObjective | fbc An objective function |
Costream | Wrapper class for the C++ standard stream ostream |
Costringstream | Wrapper class for the C++ standard file stream ofstream |
COutput | qual The output from a QualitativeSpecies |
CParameter | An SBML parameter: a named symbol with a value |
CPoint | layout Representation of a point |
CPolygon | Class representing a polygon from the SBML render extension |
CPort | comp An interface to be used in composition |
CPriority | The priority of execution of an SBML event |
CQualExtension | qual Base extension class for the package |
CQualitativeSpecies | qual Extension of Species |
CQualModelPlugin | qual Extension of Model |
CQualPkgNamespaces | qual SBMLNamespaces extension for the package |
CRadialGradient | Representation of a radial gradient object from the SBML render extension |
CRateRule | An SBML rate rule representing dx/dt = f(Y) |
CRDFAnnotationParser | MIRIAM-compliant RDF annotation reader/writer |
CReaction | An SBML reaction between species in an SBML model |
CReactionGlyph | layout A glyph for an SBML reaction |
CRectangle | Proxy of C++ Rectangle class |
CReferenceGlyph | layout Connection between an object and a glyph |
CRelAbsVector | This class represents a pair of numerical values where one value represents an absolute value and the other value is a relative value in percent |
CRenderCubicBezier | CubicBezier representation for RenderCurve objects and Polygon objects |
CRenderCurve | Implementation of the Curve concept from the SBML render extension |
CRenderExtension | Proxy of C++ RenderExtension class |
CRenderGraphicalObjectPlugin | Proxy of C++ RenderGraphicalObjectPlugin class |
CRenderGroup | The RenderGroup concept from the SBML render extension is used to group graphical primitives together to create composite representations from simple primitives |
CRenderInformationBase | Abstract base class for local and global render information |
CRenderLayoutPlugin | Proxy of C++ RenderLayoutPlugin class |
CRenderListOfLayoutsPlugin | Proxy of C++ RenderListOfLayoutsPlugin class |
CRenderPkgNamespaces | Set of SBML Level + Version + namespace triples |
CRenderPoint | Represents a point where the coordinates can be made up of absolute as well as relative values ( |
CReplacedBy | comp Indicates an object replaced by another |
CReplacedElement | comp Indicates an object replaces another |
CReplacing | comp Convenience class |
CRule | Parent class for SBML rules in libSBML |
CSBase | SBML's SBase class, base class of most SBML objects |
CSBaseList | Class for managing lists of SBase objects |
CSBasePlugin | Base class for extending SBML objects in packages |
CSBaseRef | comp Base class for references to objects |
CSBMLConverter | Base class for SBML converters |
CSBMLConverterRegistry | Registry of all libSBML SBML converters |
CSBMLDocument | Overall SBML container object |
CSBMLDocumentPlugin | Base class for extending SBMLDocument in packages |
CSBMLError | An error, warning or other diagnostic |
CSBMLErrorLog | Log of diagnostics reported during processing |
CSBMLExtension | Core class for SBML Level 3 package plug-ins |
CSBMLExtensionException | Exception used by package extensions |
CSBMLExtensionRegistry | Registry where package extensions are registered |
CSBMLFileResolver | comp Resolves documents stored on a file system |
CSBMLFunctionDefinitionConverter | Converter to expand user-defined functions in-line |
CSBMLIdConverter | Converter for replacing object identifiers |
CSBMLInferUnitsConverter | Converter for inferring and setting parameter units |
CSBMLInitialAssignmentConverter | Converter that removes SBML initial assignments |
CSBMLLevelVersionConverter | Whole-document SBML Level/Version converter |
CSBMLLocalParameterConverter | Converter to turn local parameters into global ones |
CSBMLNamespaces | Set of SBML Level + Version + namespace triples |
CSBMLNamespacesList | Class for managing lists of SBMLNamespaces objects |
CSBMLReactionConverter | Converter to replace reactions with SBML rate rules |
CSBMLReader | File and text-string SBML reader |
CSBMLResolver | comp Base class for SBML resolvers |
CSBMLResolverRegistry | comp Registry of all SBML resolvers |
CSBMLRuleConverter | Converter that sorts SBML rules and assignments |
CSBMLStripPackageConverter | Converter that removes SBML Level 3 packages |
CSBMLUnitsConverter | Converts a model's existing units to SI units |
CSBMLUri | comp Utility class for handling URIs |
CSBMLValidator | Base class for SBML validators |
CSBMLWriter | File and text-string SBML writer |
CSBO | Facilities for using the Systems Biology Ontology |
CSimpleSpeciesReference | Abstract class for references to species in reactions |
CSpecies | An SBML species – a pool of entities |
CSpeciesGlyph | layout A glyph for an SBML species |
CSpeciesReference | A reference to an SBML species in a reaction |
CSpeciesReferenceGlyph | layout A glyph for an SBML species reference |
CSpeciesType | A species type in SBML Level 2 |
CStoichiometryMath | Stochiometry expressions in SBML Level 2 reactions |
CStringSet | Proxy of C++ std::set<(std::string)> class |
CStyle | Abstract base class for local and global styles |
CSubmodel | comp A model instance inside another model |
CSyntaxChecker | Methods for checking the validity of SBML identifiers |
CText | Instantiates a new Text object with the given id and position offset |
CTextGlyph | layout A glyph for a text label |
CTransformation | Implementation of a 3D transformation matrix |
CTransformation2D | Implementation of a 2D transformation matrix |
CTransition | qual A transition of a QualitativeSpecies |
CTrigger | The trigger expression for an SBML event |
CUnit | A single unit referenced in an SBML unit definition |
CUnitDefinition | A definition of a unit used in an SBML model |
CXMLAttributes | A list of attributes on an XML element |
CXMLError | XML-level errors, warnings and other diagnostics |
CXMLErrorLog | Log of diagnostics reported during XML processing |
CXMLInputStream | An interface to an XML input stream |
CXMLNamespaces | An XML Namespace |
CXMLNode | A node in libSBML's XML document tree |
CXMLOutputStream | Interface to an XML output stream |
CXMLOwningOutputFileStream | Proxy of C++ XMLOwningOutputFileStream class |
CXMLOwningOutputStringStream | Proxy of C++ XMLOwningOutputStringStream class |
CXMLToken | A token in an XML stream |
CXMLTriple | A qualified XML name |
CSBMLReader | File and text-string SBML reader |
CSBMLWriter | File and text-string SBML writer |