VTK  9.0.1
vtkMINCImageWriter.h
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1 /*=========================================================================
2 
3  Program: Visualization Toolkit
4  Module: vtkMINCImageWriter.h
5 
6  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
7  All rights reserved.
8  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
9 
10  This software is distributed WITHOUT ANY WARRANTY; without even
11  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
12  PURPOSE. See the above copyright notice for more information.
13 
14 =========================================================================*/
15 /*=========================================================================
16 
17 Copyright (c) 2006 Atamai, Inc.
18 
19 Use, modification and redistribution of the software, in source or
20 binary forms, are permitted provided that the following terms and
21 conditions are met:
22 
23 1) Redistribution of the source code, in verbatim or modified
24  form, must retain the above copyright notice, this license,
25  the following disclaimer, and any notices that refer to this
26  license and/or the following disclaimer.
27 
28 2) Redistribution in binary form must include the above copyright
29  notice, a copy of this license and the following disclaimer
30  in the documentation or with other materials provided with the
31  distribution.
32 
33 3) Modified copies of the source code must be clearly marked as such,
34  and must not be misrepresented as verbatim copies of the source code.
35 
36 THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE SOFTWARE "AS IS"
37 WITHOUT EXPRESSED OR IMPLIED WARRANTY INCLUDING, BUT NOT LIMITED TO,
38 THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
39 PURPOSE. IN NO EVENT SHALL ANY COPYRIGHT HOLDER OR OTHER PARTY WHO MAY
40 MODIFY AND/OR REDISTRIBUTE THE SOFTWARE UNDER THE TERMS OF THIS LICENSE
41 BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL OR CONSEQUENTIAL DAMAGES
42 (INCLUDING, BUT NOT LIMITED TO, LOSS OF DATA OR DATA BECOMING INACCURATE
43 OR LOSS OF PROFIT OR BUSINESS INTERRUPTION) ARISING IN ANY WAY OUT OF
44 THE USE OR INABILITY TO USE THE SOFTWARE, EVEN IF ADVISED OF THE
45 POSSIBILITY OF SUCH DAMAGES.
46 
47 =========================================================================*/
68 #ifndef vtkMINCImageWriter_h
69 #define vtkMINCImageWriter_h
70 
71 #include "vtkIOMINCModule.h" // For export macro
72 #include "vtkImageWriter.h"
73 
74 class vtkStringArray;
75 class vtkIdTypeArray;
76 class vtkDoubleArray;
77 class vtkMatrix4x4;
78 
79 // A special class that holds the attributes
81 
82 class VTKIOMINC_EXPORT vtkMINCImageWriter : public vtkImageWriter
83 {
84 public:
86 
88  void PrintSelf(ostream& os, vtkIndent indent) override;
89 
93  virtual const char* GetFileExtensions() { return ".mnc"; }
94 
98  virtual const char* GetDescriptiveName() { return "MINC"; }
99 
103  void SetFileName(const char* name) override;
104 
111  void Write() override;
112 
114 
125  virtual void SetDirectionCosines(vtkMatrix4x4* matrix);
126  vtkGetObjectMacro(DirectionCosines, vtkMatrix4x4);
128 
130 
135  vtkSetMacro(RescaleSlope, double);
136  vtkGetMacro(RescaleSlope, double);
137  vtkSetMacro(RescaleIntercept, double);
138  vtkGetMacro(RescaleIntercept, double);
140 
142 
146  virtual void SetImageAttributes(vtkMINCImageAttributes* attributes);
147  virtual vtkMINCImageAttributes* GetImageAttributes() { return this->ImageAttributes; }
149 
151 
155  vtkSetMacro(StrictValidation, vtkTypeBool);
156  vtkBooleanMacro(StrictValidation, vtkTypeBool);
157  vtkGetMacro(StrictValidation, vtkTypeBool);
159 
161 
165  vtkSetStringMacro(HistoryAddition);
166  vtkGetStringMacro(HistoryAddition);
168 
169 protected:
172 
176 
178  double RescaleSlope;
181  int DataUpdateExtent[6];
182 
184  double FileValidRange[2];
187 
189 
191 
193 
194  int Permutation[3];
195  int Flip[3];
196 
199 
201 
202  virtual int OpenNetCDFFile(const char* filename, int& ncid);
203  virtual int CloseNetCDFFile(int ncid);
204 
205  virtual int IndexFromDimensionName(const char* dimName);
206  virtual void ComputePermutationFromOrientation(int permutation[3], int flip[3]);
207  virtual int CreateMINCDimensions(vtkImageData* input, int timeStep, int* dimids);
208  virtual int CreateMINCVariables(vtkImageData* input, int timeStep, int* dimids);
209  virtual int WriteMINCFileAttributes(vtkImageData* input, int timeStep);
210  virtual int WriteMINCData(vtkImageData* input, int frameNumber, int wholeExt[6], int upExt[6]);
211  virtual void FindRescale(double& rescaleSlope, double& rescaleIntercept);
212  virtual void FindMINCValidRange(double range[2]);
213 
215 
217  vtkInformationVector* outputVector) override;
218 
220  vtkInformationVector* outputVector) override;
221 
222  int RequestData(vtkInformation* request, vtkInformationVector** inputVector,
223  vtkInformationVector* outputVector) override;
224 
225 private:
226  vtkMINCImageWriter(const vtkMINCImageWriter&) = delete;
227  void operator=(const vtkMINCImageWriter&) = delete;
228 };
229 
230 #endif
dynamic, self-adjusting array of double
dynamic, self-adjusting array of vtkIdType
topologically and geometrically regular array of data
Definition: vtkImageData.h:42
Writes images to files.
a simple class to control print indentation
Definition: vtkIndent.h:34
Store zero or more vtkInformation instances.
Store vtkAlgorithm input/output information.
A container for a MINC image header.
A writer for MINC files.
int RequestUpdateExtent(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
Subclasses can reimplement this method to translate the update extent requests from each output port ...
int RequestData(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
This is called in response to a REQUEST_DATA request from the executive.
virtual int IndexFromDimensionName(const char *dimName)
virtual int CloseNetCDFFile(int ncid)
static vtkMINCImageWriter * New()
virtual void ComputePermutationFromOrientation(int permutation[3], int flip[3])
void Write() override
Write the data.
virtual vtkMINCImageAttributes * GetImageAttributes()
virtual int OpenNetCDFFile(const char *filename, int &ncid)
virtual const char * GetDescriptiveName()
Get the name of this file format.
virtual void FindMINCValidRange(double range[2])
vtkTypeBool StrictValidation
virtual int CreateMINCDimensions(vtkImageData *input, int timeStep, int *dimids)
virtual int CreateMINCVariables(vtkImageData *input, int timeStep, int *dimids)
virtual const char * GetFileExtensions()
Get the extension for this file format.
vtkStringArray * FileDimensionNames
int RequestInformation(vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector) override
Subclasses can reimplement this method to collect information from their inputs and set information f...
void SetFileName(const char *name) override
Set the file name.
virtual void SetImageAttributes(vtkMINCImageAttributes *attributes)
Set the image attributes, which contain patient information and other useful metadata.
virtual int WriteMINCData(vtkImageData *input, int frameNumber, int wholeExt[6], int upExt[6])
~vtkMINCImageWriter() override
virtual void FindRescale(double &rescaleSlope, double &rescaleIntercept)
int FillInputPortInformation(int port, vtkInformation *info) override
Fill the input port information objects for this algorithm.
vtkMatrix4x4 * DirectionCosines
vtkMINCImageAttributes * ImageAttributes
virtual void SetDirectionCosines(vtkMatrix4x4 *matrix)
Set a matrix that describes the orientation of the data.
void PrintSelf(ostream &os, vtkIndent indent) override
Methods invoked by print to print information about the object including superclasses.
virtual int WriteMINCFileAttributes(vtkImageData *input, int timeStep)
represent and manipulate 4x4 transformation matrices
Definition: vtkMatrix4x4.h:36
a vtkAbstractArray subclass for strings
@ info
Definition: vtkX3D.h:382
@ port
Definition: vtkX3D.h:453
@ range
Definition: vtkX3D.h:244
@ name
Definition: vtkX3D.h:225
int vtkTypeBool
Definition: vtkABI.h:69