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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.MrcBinaryReader
class MrcBinaryReader
Nested Class Summary | |
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private class |
MrcBinaryReader.MrcHeader
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Field Summary | |
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(package private) byte[] |
b2
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(package private) byte[] |
b4
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(package private) MrcBinaryReader.MrcHeader |
mrcHeader
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Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, canDownsample, endOfData, isAngstroms, negativeAtomCount |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next |
Constructor Summary | |
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MrcBinaryReader(SurfaceGenerator sg,
java.lang.String fileName,
boolean isBigEndian)
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Method Summary | |
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protected float |
nextVoxel()
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protected void |
readAtomCountAndOrigin()
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protected void |
readTitleLines()
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protected void |
readVoxelVector(int voxelVectorIndex)
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protected void |
skipData(int nPoints)
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Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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getNextVoxelValue, getVoxelBitSet, gotoData, readExtraLine, readSurfaceData, readVolumeData, readVolumeParameters, readVolumetricHeader, skipComments |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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determineFileType, discardTempData, getTokens, parseFloat, parseFloat, parseInt, parseInt, parseIntNext, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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MrcBinaryReader.MrcHeader mrcHeader
byte[] b2
byte[] b4
Constructor Detail |
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MrcBinaryReader(SurfaceGenerator sg, java.lang.String fileName, boolean isBigEndian)
Method Detail |
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protected void readTitleLines() throws java.lang.Exception
readTitleLines
in class VolumeFileReader
java.lang.Exception
protected void readAtomCountAndOrigin()
readAtomCountAndOrigin
in class VolumeFileReader
protected void readVoxelVector(int voxelVectorIndex)
readVoxelVector
in class VolumeFileReader
protected float nextVoxel() throws java.lang.Exception
nextVoxel
in class VolumeFileReader
java.lang.Exception
protected void skipData(int nPoints) throws java.lang.Exception
skipData
in class VolumeFileReader
java.lang.Exception
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