org.jmol.adapter.readers.more
Class SpartanSmolReader
java.lang.Object
org.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.more.SpartanInputReader
org.jmol.adapter.readers.more.SpartanSmolReader
public class SpartanSmolReader
- extends SpartanInputReader
Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, doApplySymmetry, filter, getHeader, haveAtomFilter, havePartialChargeFilter, htParams, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveSymmetryOperators, iHaveUnitCell, isTrajectory, latticeCells, line, modelNumber, needToApplySymmetry, next, prevline, reader, readerName, spaceGroup, templateAtomCount |
Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addJmolScript, addPrimitiveLatticeVector, addSites, applySymmetryAndSetTrajectory, checkLineForScript, checkLineForScript, clearLatticeParameters, deducePdbElementSymbol, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, fillDataBlock, filterAtom, filterAtom, getElementSymbol, getStrings, getTokens, getTokens, getTokens, getTokensFloat, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readAtomSetCollectionFromDOM, readData, readData, readLine, readLineTrimmed, setAtomCoord, setAtomCoord, setError, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
endCheck
private java.lang.String endCheck
moData
private java.util.Hashtable moData
title
private java.lang.String title
spartanArchive
SpartanArchive spartanArchive
titles
java.util.Hashtable titles
SpartanSmolReader
public SpartanSmolReader()
readAtomSetCollection
public void readAtomSetCollection(java.io.BufferedReader reader)
- Specified by:
readAtomSetCollection
in class AtomSetCollectionReader
readOutput
private void readOutput()
throws java.lang.Exception
- Throws:
java.lang.Exception
readArchive
private void readArchive()
throws java.lang.Exception
- Throws:
java.lang.Exception
readProperties
private void readProperties()
throws java.lang.Exception
- Throws:
java.lang.Exception
getModelNumber
private int getModelNumber()
readTransform
private void readTransform()
throws java.lang.Exception
- Throws:
java.lang.Exception
readArchiveHeader
private boolean readArchiveHeader()
throws java.lang.Exception
- Throws:
java.lang.Exception