Methods
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__init__
add_nonexisting_bonds
get_cdml_dom
on_begin
on_end_set_viewport
transform_CML_bond
transform_atom
transform_bond
transform_molecule
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__init__
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__init__ ( self )
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add_nonexisting_bonds
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add_nonexisting_bonds ( self )
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get_cdml_dom
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get_cdml_dom ( self, file_name )
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on_begin
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on_begin ( self )
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on_end_set_viewport
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on_end_set_viewport ( self )
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transform_CML_bond
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transform_CML_bond (
self,
bond,
doc,
)
called by transform_bond in order to do the transform from CML_bond instance to CDML
Exceptions
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plugin.import_exception( "missing " + str(bond.not_enough_data() ) + " in bond specification" )
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transform_atom
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transform_atom (
self,
a,
doc,
)
Exceptions
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plugin.import_exception( "missing " + str(atom.not_enough_data() ) + " in atom specification" )
plugin.import_exception( detail )
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transform_bond
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transform_bond (
self,
b,
doc,
)
Exceptions
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plugin.import_exception(str( detail ) )
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transform_molecule
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transform_molecule (
self,
mol,
doc,
)
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