Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.
The command line parameters of this tool are:
INI file documentation of this tool:
OpenMS / TOPP release 2.1.0
Documentation generated on Fri Jan 6 2017 21:40:07 using doxygen 1.8.11