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java.lang.Objectorg.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.more.V3000Reader
public class V3000Reader
A reader for MDL V3000 files
http://www.mdli.com/downloads/public/ctfile/ctfile.jsp
Field Summary | |
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(package private) int |
headerAtomCount
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(package private) int |
headerBondCount
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Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
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ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, desiredModelNumber, desiredSpaceGroupIndex, doApplySymmetry, filter, getHeader, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveDesiredModel, iHaveSymmetryOperators, iHaveUnitCell, latticeCells, line, modelNumber, needToApplySymmetry, next, notionalUnitCell, prevline, primitiveLatticeVectors, ptLine, reader, readerName, spaceGroup |
Constructor Summary | |
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V3000Reader()
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Method Summary | |
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(package private) void |
flushLines()
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(package private) java.lang.String |
processAtomBlock()
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(package private) void |
processBondBlock()
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(package private) void |
processCtab()
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AtomSetCollection |
readAtomSetCollection(java.io.BufferedReader reader)
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(package private) void |
readLineWithContinuation()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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int headerAtomCount
int headerBondCount
Constructor Detail |
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public V3000Reader()
Method Detail |
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public AtomSetCollection readAtomSetCollection(java.io.BufferedReader reader)
readAtomSetCollection
in class AtomSetCollectionReader
void processCtab() throws java.lang.Exception
java.lang.Exception
java.lang.String processAtomBlock() throws java.lang.Exception
java.lang.Exception
void processBondBlock() throws java.lang.Exception
java.lang.Exception
void readLineWithContinuation() throws java.lang.Exception
java.lang.Exception
void flushLines() throws java.lang.Exception
java.lang.Exception
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