BufferedMatrix.read.probematrix {BufferedMatrixMethods}R Documentation

Read CEL file data into PM or MM BufferedMatrix

Description

Read CEL data into BufferedMatrix objects.

Usage

BufferedMatrix.read.probematrix(..., filenames = character(0),celfile.path=NULL,rm.mask = FALSE, rm.outliers = FALSE, rm.extra = FALSE, verbose = FALSE,which="pm",cdfname = NULL)

Arguments

... file names separated by comma.
filenames file names in a character vector.
celfile.path path where CEL files are located
rm.mask should the spots marked as 'MASKS' set to NA ?
rm.outliers should the spots marked as 'OUTLIERS' set to NA
rm.extra if TRUE, overrides what is in rm.mask and rm.oultiers
verbose verbosity flag
which should be either "pm", "mm" or "both"
cdfname Used to specify the name of an alternative cdf package. If set to NULL, the usual cdf package based on Affymetrix' mappings will be used.

Value

A list of one or two BufferedMatrix objects. Each BufferedMatrix objects is either PM or MM data. No AffyBatch is created.

Author(s)

Ben Bolstad bmb@bmbolstad.com

See Also

AffyBatch, read.affybatch


[Package BufferedMatrixMethods version 1.12.0 Index]