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PercolatorAdapter

PercolatorAdapter facilitates the input to, the call of and output integration of Percolator. Percolator (http://per-colator.com/) is a tool to apply semi-supervised learning for peptide identification from shotgun proteomics datasets.

Experimental classes:
This tool is work in progress and usage and input requirements might change.
pot. predecessor tools $ \longrightarrow $ PercolatorAdapter $ \longrightarrow $ pot. successor tools
PSMFeatureExtractor IDFilter

Percolator is search engine sensitive, i.e. it's input features vary, depending on the search engine. Must be prepared beforehand. If you do not want to use the specific features, use the generic-feature-set flag. Will incorporate the score attribute of a PSM, so be sure, the score you want is set as main score with TOPP_IDScoreSwitcher . Be aware, that you might very well experience a perfomance loss compared to the search engine specific features.

The command line parameters of this tool are:

INI file documentation of this tool:

Percolator is written by Lukas Käll (http://per-colator.com/ Copyright Lukas Käll lukas.nosp@m..kal.nosp@m.l@sci.nosp@m.life.nosp@m.lab.s.nosp@m.e)


OpenMS / TOPP release 2.3.0 Documentation generated on Thu Mar 8 2018 04:35:37 using doxygen 1.8.14