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XFDR

Calculates false discovery rate estimates on crosslink identifications.

This tool calculates and FDR estimate for crosslink identifications, which are produced by OpenPepXL. The method employed currently is identical to the target-decoy approach used by xProphet (Walzthoeni et al., 2012). Consequently, this tool can also consume xquest.xml files (produced either by OpenPepXL or xQuest). The tool supports output in the idXML and mzIdentML formats.

Experimental classes:
This tool is work in progress and usage and input requirements might change.
pot. predecessor tools $ \longrightarrow $ XFDR $ \longrightarrow $ pot. successor tools
OpenPepXL OpenPepXLLF -

The command line parameters of this tool are:

INI file documentation of this tool:


OpenMS / TOPP release 2.3.0 Documentation generated on Thu Mar 8 2018 04:35:37 using doxygen 1.8.14