fslpy
2.6.1
fslpy
fsl
Contributing to
fslpy
fslpy
release history
fslpy
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Index
Index
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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U
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V
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W
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X
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__call__() (fsl.utils.memoize.Instanceify method)
(fsl.utils.memoize.Memoize method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
(fsl.wrappers.wrapperutils._FileOrThing method)
__contains__() (fsl.utils.cache.Cache method)
__del__() (fsl.data.featdesign.VoxelwiseEVMixin method)
(fsl.data.featimage.FEATImage method)
(fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
__dict__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
__eq__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.utils.filetree.query.Match method)
__ge__() (fsl.utils.filetree.query.Match method)
__get__() (fsl.utils.idle.MutexFactory method)
(fsl.utils.memoize.Instanceify method)
__getitem__() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.utils.cache.Cache method)
__gt__() (fsl.utils.filetree.query.Match method)
__hash__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.utils.filetree.query.Match attribute)
__hash__() (fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
__init__() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.data.atlases.AtlasRegistry method)
(fsl.data.atlases.LabelAtlas method)
(fsl.data.atlases.StatisticAtlas method)
(fsl.data.bitmap.Bitmap method)
(fsl.data.dicom.DicomImage method)
(fsl.data.dtifit.DTIFitTensor method)
(fsl.data.featdesign.ConfoundEV method)
(fsl.data.featdesign.EV method)
(fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featdesign.MotionParameterEV method)
(fsl.data.featdesign.NormalEV method)
(fsl.data.featdesign.VoxelwiseConfoundEV method)
(fsl.data.featdesign.VoxelwiseEV method)
(fsl.data.featdesign.VoxelwiseEVMixin method)
(fsl.data.featimage.FEATImage method)
(fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.image.Image method)
(fsl.data.image.Nifti method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.data.melodicimage.MelodicImage method)
(fsl.data.mesh.Mesh method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
(fsl.data.vtk.VTKMesh method)
(fsl.transform.nonlinear.CoefficientField method)
(fsl.transform.nonlinear.DeformationField method)
(fsl.transform.nonlinear.NonLinearTransform method)
(fsl.utils.cache.Cache method)
(fsl.utils.cache.CacheItem method)
(fsl.utils.filetree.filetree.FileTree method)
(fsl.utils.filetree.query.FileTreeQuery method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.idle.IdleTask method)
(fsl.utils.idle.MutexFactory method)
(fsl.utils.idle.Task method)
(fsl.utils.idle.TaskThread method)
(fsl.utils.memoize.Instanceify method)
(fsl.utils.memoize.Memoize method)
(fsl.utils.notifier._Listener method)
(fsl.utils.platform.Platform method)
(fsl.utils.settings.Settings method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
(fsl.wrappers.fslmaths.fslmaths method)
(fsl.wrappers.wrapperutils._FileOrThing method)
(fsl.wrappers.wrapperutils._FileOrThing._Results method)
__le__() (fsl.utils.filetree.query.Match method)
__len__() (fsl.utils.cache.Cache method)
__lt__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.utils.filetree.query.Match method)
__module__ (fsl.data.atlases.Atlas attribute)
(fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.atlases.AtlasRegistry attribute)
(fsl.data.atlases.LabelAtlas attribute)
(fsl.data.atlases.MaskError attribute)
(fsl.data.atlases.ProbabilisticAtlas attribute)
(fsl.data.atlases.StatisticAtlas attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.dicom.DicomImage attribute)
(fsl.data.dtifit.DTIFitTensor attribute)
(fsl.data.featdesign.BasisFunctionEV attribute)
(fsl.data.featdesign.ConfoundEV attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.FSFError attribute)
(fsl.data.featdesign.MotionParameterEV attribute)
(fsl.data.featdesign.NormalEV attribute)
(fsl.data.featdesign.TemporalDerivativeEV attribute)
(fsl.data.featdesign.VoxelwiseConfoundEV attribute)
(fsl.data.featdesign.VoxelwiseEV attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.data.featimage.FEATImage attribute)
(fsl.data.fixlabels.InvalidLabelFileError attribute)
(fsl.data.freesurfer.FreesurferMesh attribute)
(fsl.data.gifti.GiftiMesh attribute)
(fsl.data.image.Image attribute)
(fsl.data.image.Nifti attribute)
(fsl.data.image.PathError attribute)
(fsl.data.imagewrapper.ImageWrapper attribute)
(fsl.data.melodicimage.MelodicImage attribute)
(fsl.data.mesh.Mesh attribute)
(fsl.data.mghimage.MGHImage attribute)
(fsl.data.volumelabels.VolumeLabels attribute)
(fsl.data.vtk.VTKMesh attribute)
(fsl.scripts.atlasq.HelpFormatter attribute)
(fsl.scripts.atlasq.IdentifyError attribute)
(fsl.transform.nonlinear.CoefficientField attribute)
(fsl.transform.nonlinear.DeformationField attribute)
(fsl.transform.nonlinear.NonLinearTransform attribute)
(fsl.transform.x5.X5Error attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.cache.Expired attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.filetree.MissingVariable attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.idle.TaskThread attribute)
(fsl.utils.idle.TaskThreadVeto attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier.Registered attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.path.PathError attribute)
(fsl.utils.platform.Platform attribute)
(fsl.utils.run.FSLNotPresent attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
__neq__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
__new__() (fsl.data.mesh.Mesh static method)
(fsl.utils.meta.Meta static method)
(fsl.utils.notifier.Notifier static method)
__repr__() (fsl.data.atlases.AtlasDescription method)
(fsl.data.atlases.AtlasLabel method)
(fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
(fsl.data.mesh.Mesh method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.notifier._Listener method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
__setitem__() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
(fsl.utils.cache.Cache method)
__str__() (fsl.data.bitmap.Bitmap method)
(fsl.data.image.Image method)
(fsl.data.mesh.Mesh method)
(fsl.utils.filetree.query.Match method)
(fsl.utils.notifier._Listener method)
(fsl.utils.weakfuncref.WeakFunctionRef method)
__weakref__ (fsl.data.atlases.AtlasDescription attribute)
(fsl.data.atlases.AtlasLabel attribute)
(fsl.data.atlases.MaskError attribute)
(fsl.data.bitmap.Bitmap attribute)
(fsl.data.featdesign.EV attribute)
(fsl.data.featdesign.FEATFSFDesign attribute)
(fsl.data.featdesign.FSFError attribute)
(fsl.data.featdesign.VoxelwiseEVMixin attribute)
(fsl.data.fixlabels.InvalidLabelFileError attribute)
(fsl.data.image.PathError attribute)
(fsl.scripts.atlasq.IdentifyError attribute)
(fsl.transform.x5.X5Error attribute)
(fsl.utils.cache.Cache attribute)
(fsl.utils.cache.CacheItem attribute)
(fsl.utils.cache.Expired attribute)
(fsl.utils.filetree.filetree.FileTree attribute)
(fsl.utils.filetree.filetree.MissingVariable attribute)
(fsl.utils.filetree.query.FileTreeQuery attribute)
(fsl.utils.filetree.query.Match attribute)
(fsl.utils.idle.IdleTask attribute)
(fsl.utils.idle.MutexFactory attribute)
(fsl.utils.idle.Task attribute)
(fsl.utils.idle.TaskThreadVeto attribute)
(fsl.utils.memoize.Instanceify attribute)
(fsl.utils.memoize.Memoize attribute)
(fsl.utils.meta.Meta attribute)
(fsl.utils.notifier.Notifier attribute)
(fsl.utils.notifier.Registered attribute)
(fsl.utils.notifier._Listener attribute)
(fsl.utils.path.PathError attribute)
(fsl.utils.run.FSLNotPresent attribute)
(fsl.utils.settings.Settings attribute)
(fsl.utils.weakfuncref.WeakFunctionRef attribute)
(fsl.wrappers.fslmaths.fslmaths attribute)
(fsl.wrappers.wrapperutils._FileOrThing attribute)
(fsl.wrappers.wrapperutils._FileOrThing._Results attribute)
_AtlasRegistry__getKnownAtlases() (fsl.data.atlases.AtlasRegistry method)
_AtlasRegistry__saveKnownAtlases() (fsl.data.atlases.AtlasRegistry method)
_buildMessageFormat() (in module fsl.utils.deprecated)
_buildWarningSourceIdentity() (in module fsl.utils.deprecated)
_Cache__parseDefault() (fsl.utils.cache.Cache method)
_canDisable() (in module fsl.utils.assertions)
_CONFIG_ID (in module fsl.utils.settings)
_DISABLE_ASSERTIONS (in module fsl.utils.assertions)
_dryrun() (in module fsl.utils.run)
_FileOrThing (class in fsl.wrappers.wrapperutils)
_FileOrThing._Results (class in fsl.wrappers.wrapperutils)
_FileOrThing__generateResult() (fsl.wrappers.wrapperutils._FileOrThing method)
_FileOrThing__prepareArgs() (fsl.wrappers.wrapperutils._FileOrThing method)
_fillPoints() (in module fsl.transform.affine)
_flatten_job_ids() (in module fsl.utils.fslsub)
_format_usage() (fsl.scripts.atlasq.HelpFormatter method)
_forwardStream() (in module fsl.utils.run)
_fslmaths__run() (fsl.wrappers.fslmaths.fslmaths method)
_get_template_tree() (fsl.utils.filetree.filetree.FileTree method)
_idleCallRate (in module fsl.utils.idle)
_idleQueue (in module fsl.utils.idle)
_idleQueueDict (in module fsl.utils.idle)
_idleRegistered (in module fsl.utils.idle)
_idleTimer (in module fsl.utils.idle)
_Image__dataRangeChanged() (fsl.data.image.Image method)
_Image__headerChanged() (fsl.data.image.Image method)
_ImageWrapper__expandCoverage() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__getData() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__imageIsCovered() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__updateDataRangeOnRead() (fsl.data.imagewrapper.ImageWrapper method)
_ImageWrapper__updateDataRangeOnWrite() (fsl.data.imagewrapper.ImageWrapper method)
_Listener (class in fsl.utils.notifier)
_Memoize__makeKey() (fsl.utils.memoize.Memoize method)
_Memoize__setFunction() (fsl.utils.memoize.Memoize method)
_normaliseBounds() (in module fsl.utils.image.roi)
_Notifier__getListeners() (fsl.utils.notifier.Notifier method)
_prepareArgs() (in module fsl.utils.run)
_readAffine() (in module fsl.transform.x5)
_readDeformation() (in module fsl.transform.x5)
_readFnirtCoefficientField() (in module fsl.transform.fnirt)
_readFnirtDeformationField() (in module fsl.transform.fnirt)
_readMetadata() (in module fsl.transform.x5)
_readSpace() (in module fsl.transform.x5)
_realrun() (in module fsl.utils.run)
_Settings__fixPath() (fsl.utils.settings.Settings method)
_Settings__getConfigDir() (fsl.utils.settings.Settings method)
_Settings__readConfigFile() (fsl.utils.settings.Settings method)
_unwrap() (in module fsl.wrappers.wrapperutils)
_update_wrapper() (in module fsl.wrappers.wrapperutils)
_warned_cache (in module fsl.utils.deprecated)
_WeakFunctionRef__findPrivateMethod() (fsl.utils.weakfuncref.WeakFunctionRef method)
_WeakFunctionRef__isMethod() (fsl.utils.weakfuncref.WeakFunctionRef method)
_writeAffine() (in module fsl.transform.x5)
_writeDeformation() (in module fsl.transform.x5)
_writeMetadata() (in module fsl.transform.x5)
_writeSpace() (in module fsl.transform.x5)
_wxIdleLoop() (in module fsl.utils.idle)
A
abs() (fsl.wrappers.fslmaths.fslmaths method)
absolute() (fsl.transform.nonlinear.DeformationField property)
add() (fsl.wrappers.fslmaths.fslmaths method)
addAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
addComponent() (fsl.data.volumelabels.VolumeLabels method)
addExt() (in module fsl.data.image)
(in module fsl.utils.path)
addLabel() (fsl.data.volumelabels.VolumeLabels method)
addVertexData() (fsl.data.mesh.Mesh method)
addVertices() (fsl.data.mesh.Mesh method)
adjustCoverage() (in module fsl.data.imagewrapper)
all_variables() (fsl.utils.filetree.filetree.FileTree property)
allFiles() (in module fsl.utils.path)
ALLOWED_EXTENSIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
allVariables() (in module fsl.utils.filetree.query)
applyArgStyle() (in module fsl.wrappers.wrapperutils)
applyDeformation() (in module fsl.transform.nonlinear)
applyLinear() (in module fsl.scripts.fsl_apply_x5)
applyNonlinear() (in module fsl.scripts.fsl_apply_x5)
applySmoothing() (in module fsl.utils.image.resample)
applytopup() (in module fsl.wrappers.eddy)
applywarp() (in module fsl.wrappers.fnirt)
applyxfm() (in module fsl.wrappers.flirt)
asDeformationField() (fsl.transform.nonlinear.CoefficientField method)
asImage() (fsl.data.bitmap.Bitmap method)
assertFileExists() (in module fsl.utils.assertions)
assertIsFuncGifti() (in module fsl.utils.assertions)
assertIsMelodicDir() (in module fsl.utils.assertions)
assertIsNifti() (in module fsl.utils.assertions)
assertIsNifti3D() (in module fsl.utils.assertions)
assertIsNifti4D() (in module fsl.utils.assertions)
assertIsSurfGifti() (in module fsl.utils.assertions)
assertNiftiShape() (in module fsl.utils.assertions)
Atlas (class in fsl.data.atlases)
Atlas() (in module fsl.utils.parse_data)
AtlasDescription (class in fsl.data.atlases)
AtlasLabel (class in fsl.data.atlases)
atlasOrDesc() (in module fsl.scripts.atlasq)
atlasquery_emulation() (in module fsl.scripts.atlasq)
AtlasRegistry (class in fsl.data.atlases)
axes() (fsl.utils.filetree.query.FileTreeQuery method)
axisAnglesToRotMat() (in module fsl.transform.affine)
axisBounds() (in module fsl.transform.affine)
axisMapping() (fsl.data.image.Nifti method)
B
BasisFunctionEV (class in fsl.data.featdesign)
bet() (in module fsl.wrappers.bet)
bin() (fsl.wrappers.fslmaths.fslmaths method)
binv() (fsl.wrappers.fslmaths.fslmaths method)
Bitmap (class in fsl.data.bitmap)
BITMAP_DESCRIPTIONS (in module fsl.data.bitmap)
BITMAP_EXTENSIONS (in module fsl.data.bitmap)
block() (in module fsl.utils.idle)
bounds() (fsl.data.mesh.Mesh property)
bptf() (fsl.wrappers.fslmaths.fslmaths method)
C
Cache (class in fsl.utils.cache)
CacheItem (class in fsl.utils.cache)
calcExpansion() (in module fsl.data.imagewrapper)
calcFaceNormals() (in module fsl.data.mesh)
calcRange() (fsl.data.image.Image method)
calculateMatrix() (in module fsl.utils.image.resample)
calcVertexNormals() (in module fsl.data.mesh)
callback() (fsl.utils.notifier._Listener property)
cancelIdle() (in module fsl.utils.idle)
canHaveGui() (fsl.utils.platform.Platform property)
canonicalShape() (in module fsl.data.image)
canonicalSliceObj() (in module fsl.data.imagewrapper)
check_forbidden_characters() (in module fsl.utils.filetree.parse)
clear() (fsl.data.volumelabels.VolumeLabels method)
(fsl.utils.cache.Cache method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
clearComponents() (fsl.data.volumelabels.VolumeLabels method)
clearLabels() (fsl.data.volumelabels.VolumeLabels method)
clearVertexData() (fsl.data.mesh.Mesh method)
cluster() (in module fsl.wrappers.misc)
clusterResults() (fsl.data.featimage.FEATImage method)
cmdwrapper() (in module fsl.wrappers.wrapperutils)
CoefficientField (class in fsl.transform.nonlinear)
coefficientFieldToDeformationField() (in module fsl.transform.nonlinear)
collapseExpansions() (in module fsl.data.imagewrapper)
commonBase() (in module fsl.utils.path)
compareVersions() (in module fsl.data.dicom)
(in module fsl.version)
componentsToEigendecomposition() (in module fsl.data.dtifit)
componentsToTensor() (in module fsl.data.dtifit)
compose() (in module fsl.transform.affine)
concat() (in module fsl.transform.affine)
concatxfm() (in module fsl.wrappers.flirt)
configDir() (fsl.utils.settings.Settings property)
configID() (fsl.utils.settings.Settings property)
ConfoundEV (class in fsl.data.featdesign)
contrastNames() (fsl.data.featimage.FEATImage method)
contrasts() (fsl.data.featimage.FEATImage method)
convertDeformationSpace() (in module fsl.transform.nonlinear)
convertDeformationType() (in module fsl.transform.nonlinear)
convertwarp() (in module fsl.wrappers.fnirt)
coordLabel() (fsl.data.atlases.LabelAtlas method)
coordProportions() (fsl.data.atlases.StatisticAtlas method)
coordQuery() (in module fsl.scripts.atlasq)
coordValues() (fsl.data.atlases.StatisticAtlas method)
CORE_GEOMETRY_DESCRIPTIONS (in module fsl.data.freesurfer)
CORE_GEOMETRY_FILES (in module fsl.data.freesurfer)
coverage() (fsl.data.imagewrapper.ImageWrapper method)
covered() (fsl.data.imagewrapper.ImageWrapper property)
CRC_DCM2NIIX_VERSION (in module fsl.data.dicom)
createLock (fsl.utils.idle.MutexFactory attribute)
D
data() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Image property)
dataRange() (fsl.data.image.Image property)
(fsl.data.imagewrapper.ImageWrapper property)
dataSource() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Image property)
(fsl.data.mesh.Mesh property)
decompose() (in module fsl.transform.affine)
decomposeTensorMatrix() (in module fsl.data.dtifit)
deepest() (in module fsl.utils.path)
DEFAULT_TOPIC (in module fsl.utils.notifier)
defaultExt() (in module fsl.data.image)
defines() (fsl.utils.filetree.filetree.FileTree method)
DeformationField (class in fsl.transform.nonlinear)
deformationType() (fsl.transform.nonlinear.DeformationField property)
delete() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deleteFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
deprecated() (in module fsl.utils.deprecated)
dequeue() (fsl.utils.idle.TaskThread method)
deregister() (fsl.utils.notifier.Notifier method)
detectDeformationType() (in module fsl.transform.nonlinear)
determineAffine() (fsl.data.image.Nifti static method)
determineShape() (fsl.data.image.Nifti static method)
dicomDir() (fsl.data.dicom.DicomImage property)
DicomImage (class in fsl.data.dicom)
dilF() (fsl.wrappers.fslmaths.fslmaths method)
dilM() (fsl.wrappers.fslmaths.fslmaths method)
disable() (fsl.utils.notifier.Notifier method)
disableAll() (fsl.utils.notifier.Notifier method)
disabled() (in module fsl.utils.assertions)
displacements() (fsl.transform.nonlinear.CoefficientField method)
div() (fsl.wrappers.fslmaths.fslmaths method)
doFlirt() (in module fsl.scripts.fsl_convert_x5)
doFnirt() (in module fsl.scripts.fsl_convert_x5)
DRY_RUN (in module fsl.utils.run)
dryrun() (in module fsl.utils.run)
DTIFitTensor (class in fsl.data.dtifit)
dtype() (fsl.data.image.Image property)
E
eddy_cuda() (in module fsl.wrappers.eddy)
eigendecompositionToComponents() (in module fsl.data.dtifit)
eigendecompositionToTensor() (in module fsl.data.dtifit)
enable() (fsl.utils.notifier.Notifier method)
enableAll() (fsl.utils.notifier.Notifier method)
enabled() (in module fsl.data.dicom)
enqueue() (fsl.utils.idle.TaskThread method)
ensureIsImage() (in module fsl.utils.ensure)
ero() (fsl.wrappers.fslmaths.fslmaths method)
EV (class in fsl.data.featdesign)
evNames() (fsl.data.featimage.FEATImage method)
expectedShape() (in module fsl.data.imagewrapper)
Expired
EXTENSION_DESCRIPTIONS (in module fsl.data.gifti)
(in module fsl.data.image)
(in module fsl.data.mghimage)
(in module fsl.data.vtk)
EXTRA_GEOMETRY_FILES (in module fsl.data.freesurfer)
extra_tree_dirs() (in module fsl.utils.filetree.parse)
extract_variables() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
F
fast() (in module fsl.wrappers.fast)
FEATFSFDesign (class in fsl.data.featdesign)
FEATImage (class in fsl.data.featimage)
fieldToRefMat() (fsl.transform.nonlinear.CoefficientField property)
fieldType() (fsl.transform.nonlinear.CoefficientField property)
FILE_GROUPS (in module fsl.data.image)
filename() (fsl.data.featdesign.VoxelwiseEVMixin property)
(fsl.utils.filetree.query.Match property)
fileOrArray() (in module fsl.wrappers.wrapperutils)
fileOrImage() (in module fsl.wrappers.wrapperutils)
fileOrText() (in module fsl.wrappers.wrapperutils)
filePath() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
FileTree (class in fsl.utils.filetree.filetree)
FileTreeQuery (class in fsl.utils.filetree.query)
fill_known() (in module fsl.utils.filetree.utils)
fillh() (fsl.wrappers.fslmaths.fslmaths method)
find() (fsl.data.atlases.Atlas method)
(fsl.data.atlases.AtlasDescription method)
find_variables() (in module fsl.utils.filetree.utils)
findReferenceImage() (in module fsl.data.freesurfer)
(in module fsl.data.vtk)
fit() (fsl.data.featimage.FEATImage method)
fixExt() (in module fsl.data.image)
flirt() (in module fsl.wrappers.flirt)
flirtMatrixToSform() (in module fsl.transform.flirt)
flirtToX5() (in module fsl.scripts.fsl_convert_x5)
floatlist() (in module fsl.scripts.resample_image)
fnirt() (in module fsl.wrappers.fnirt)
fnirtToX5() (in module fsl.scripts.fsl_convert_x5)
FreesurferMesh (class in fsl.data.freesurfer)
fromFlirt() (in module fsl.transform.flirt)
fromFnirt() (in module fsl.transform.fnirt)
frozen() (fsl.utils.platform.Platform property)
FSFError
fsl (module)
fsl.data (module)
fsl.data.atlases (module)
fsl.data.bitmap (module)
fsl.data.constants (module)
fsl.data.dicom (module)
fsl.data.dtifit (module)
fsl.data.featanalysis (module)
fsl.data.featdesign (module)
fsl.data.featimage (module)
fsl.data.fixlabels (module)
fsl.data.freesurfer (module)
fsl.data.gifti (module)
fsl.data.image (module)
fsl.data.imagewrapper (module)
fsl.data.melodicanalysis (module)
fsl.data.melodicimage (module)
fsl.data.mesh (module)
fsl.data.mghimage (module)
fsl.data.utils (module)
fsl.data.vest (module)
fsl.data.volumelabels (module)
fsl.data.vtk (module)
fsl.scripts (module)
fsl.scripts.atlasq (module)
fsl.scripts.fsl_apply_x5 (module)
fsl.scripts.fsl_convert_x5 (module)
fsl.scripts.fsl_ents (module)
fsl.scripts.imcp (module)
fsl.scripts.imglob (module)
fsl.scripts.immv (module)
fsl.scripts.resample_image (module)
fsl.transform (module)
fsl.transform.affine (module)
fsl.transform.flirt (module)
fsl.transform.fnirt (module)
fsl.transform.nonlinear (module)
fsl.transform.x5 (module)
fsl.utils (module)
fsl.utils.assertions (module)
fsl.utils.cache (module)
fsl.utils.deprecated (module)
fsl.utils.ensure (module)
fsl.utils.filetree (module)
fsl.utils.filetree.filetree (module)
fsl.utils.filetree.parse (module)
fsl.utils.filetree.query (module)
fsl.utils.filetree.utils (module)
fsl.utils.fslsub (module)
fsl.utils.idle (module)
fsl.utils.image (module)
fsl.utils.image.resample (module)
fsl.utils.image.roi (module)
fsl.utils.imcp (module)
fsl.utils.memoize (module)
fsl.utils.meta (module)
fsl.utils.naninfrange (module)
fsl.utils.notifier (module)
fsl.utils.parse_data (module)
fsl.utils.path (module)
fsl.utils.platform (module)
fsl.utils.run (module)
fsl.utils.settings (module)
fsl.utils.tempdir (module)
fsl.utils.weakfuncref (module)
fsl.version (module)
fsl.wrappers (module)
fsl.wrappers.bet (module)
fsl.wrappers.eddy (module)
fsl.wrappers.fast (module)
fsl.wrappers.flirt (module)
fsl.wrappers.fnirt (module)
fsl.wrappers.fsl_anat (module)
fsl.wrappers.fslmaths (module)
fsl.wrappers.fugue (module)
fsl.wrappers.melodic (module)
fsl.wrappers.misc (module)
fsl.wrappers.wrapperutils (module)
fsl_anat() (in module fsl.wrappers.fsl_anat)
FSL_PREFIX (in module fsl.utils.run)
fsl_regfilt() (in module fsl.wrappers.melodic)
fsldevdir() (fsl.utils.platform.Platform property)
fsldir() (fsl.utils.platform.Platform property)
fslmaths (class in fsl.wrappers.fslmaths)
FSLNotPresent
fslreorient2std() (in module fsl.wrappers.misc)
fslroi() (in module fsl.wrappers.misc)
fslVersion() (fsl.utils.platform.Platform property)
fslwrapper() (in module fsl.wrappers.wrapperutils)
fugue() (in module fsl.wrappers.fugue)
full_name() (fsl.utils.filetree.query.Match property)
func_to_cmd() (in module fsl.utils.fslsub)
function() (fsl.utils.weakfuncref.WeakFunctionRef method)
G
genComponentIndexList() (in module fsl.scripts.fsl_ents)
generateAffines() (fsl.data.image.Nifti static method)
get() (fsl.data.atlases.LabelAtlas method)
(fsl.data.atlases.StatisticAtlas method)
(fsl.utils.cache.Cache method)
(fsl.utils.filetree.filetree.FileTree method)
get_all() (fsl.utils.filetree.filetree.FileTree method)
(in module fsl.utils.filetree.utils)
get_all_trees() (fsl.utils.filetree.filetree.FileTree method)
get_all_vars() (fsl.utils.filetree.filetree.FileTree method)
get_registered() (in module fsl.utils.filetree.filetree)
get_template() (fsl.utils.filetree.filetree.FileTree method)
get_variable() (fsl.utils.filetree.filetree.FileTree method)
getAffine() (fsl.data.image.Nifti method)
getAllLabels() (fsl.data.volumelabels.VolumeLabels method)
getAnalysisDir() (in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getAnalysisName() (fsl.data.featimage.FEATImage method)
getAtlasDescription() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
getClusterMask() (fsl.data.featimage.FEATImage method)
getClusterMaskFile() (in module fsl.data.featanalysis)
getComponentPowerSpectra() (in module fsl.data.melodicanalysis)
getComponentPowerSpectrum() (fsl.data.melodicimage.MelodicImage method)
getComponents() (fsl.data.volumelabels.VolumeLabels method)
getComponentTimeSeries() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getCOPE() (fsl.data.featimage.FEATImage method)
getCOPEFile() (in module fsl.data.featanalysis)
getData() (fsl.data.featdesign.VoxelwiseEVMixin method)
getDataFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getDesign() (fsl.data.featdesign.FEATFSFDesign method)
(fsl.data.featimage.FEATImage method)
getDisplayLabel() (fsl.data.volumelabels.VolumeLabels method)
getDTIFitDataPrefix() (in module fsl.data.dtifit)
getEVs() (fsl.data.featdesign.FEATFSFDesign method)
getExt() (in module fsl.data.image)
(in module fsl.utils.path)
getFEATDir() (fsl.data.featimage.FEATImage method)
getFileGroup() (in module fsl.utils.path)
getFirstLevelEVs() (in module fsl.data.featdesign)
getFIRSTPrefix() (in module fsl.data.vtk)
getFTMixFile() (in module fsl.data.melodicanalysis)
getHigherLevelEVs() (in module fsl.data.featdesign)
getICFile() (in module fsl.data.melodicanalysis)
getIdleTimeout() (in module fsl.utils.idle)
getImageWrapper() (fsl.data.image.Image method)
getLabels() (fsl.data.volumelabels.VolumeLabels method)
getMeanFile() (fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.melodicanalysis)
getMelodicDir() (fsl.data.melodicimage.MelodicImage method)
getMelodicFile() (in module fsl.data.featanalysis)
getMeta() (fsl.utils.meta.Meta method)
getMixFile() (in module fsl.data.melodicanalysis)
getNumComponents() (in module fsl.data.melodicanalysis)
getOrientation() (fsl.data.image.Nifti method)
getPE() (fsl.data.featimage.FEATImage method)
getPEFile() (in module fsl.data.featanalysis)
getReportFile() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getResidualFile() (in module fsl.data.featanalysis)
getResiduals() (fsl.data.featimage.FEATImage method)
getTaskThread() (fsl.data.imagewrapper.ImageWrapper method)
getThresholds() (in module fsl.data.featanalysis)
getTopLevelAnalysisDir() (fsl.data.featimage.FEATImage method)
(fsl.data.melodicimage.MelodicImage method)
(in module fsl.data.featanalysis)
(in module fsl.data.melodicanalysis)
getVertexData() (fsl.data.mesh.Mesh method)
getVertexDataColourTable() (fsl.data.freesurfer.FreesurferMesh method)
getXFormCode() (fsl.data.image.Nifti method)
getZStatFile() (in module fsl.data.featanalysis)
getZStats() (fsl.data.featimage.FEATImage method)
GiftiMesh (class in fsl.data.gifti)
glIsSoftwareRenderer() (fsl.utils.platform.Platform property)
glRenderer() (fsl.utils.platform.Platform property)
glVersion() (fsl.utils.platform.Platform property)
guessType() (in module fsl.data.utils)
H
hasAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
hasComponent() (fsl.data.volumelabels.VolumeLabels method)
hasExt() (in module fsl.utils.path)
hasLabel() (fsl.data.volumelabels.VolumeLabels method)
hasMelodicDir() (in module fsl.data.featanalysis)
hasStats() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
haveGui() (fsl.utils.platform.Platform property)
HelpFormatter (class in fsl.scripts.atlasq)
HIDE_IF_TRUE (in module fsl.wrappers.wrapperutils)
I
identifyAffine() (fsl.data.image.Nifti static method)
identifyAtlas() (in module fsl.scripts.atlasq)
IdentifyError
idle() (in module fsl.utils.idle)
idleReset() (in module fsl.utils.idle)
IdleTask (class in fsl.utils.idle)
idleWhen() (in module fsl.utils.idle)
Image (class in fsl.data.image)
image() (fsl.data.featdesign.VoxelwiseEVMixin property)
Image() (in module fsl.utils.parse_data)
ImageOut() (in module fsl.utils.parse_data)
ImageWrapper (class in fsl.data.imagewrapper)
imcp() (in module fsl.utils.imcp)
imglob() (in module fsl.scripts.imglob)
immv() (in module fsl.utils.imcp)
indices() (fsl.data.mesh.Mesh property)
inferType() (in module fsl.transform.x5)
info() (in module fsl.utils.fslsub)
inIdle() (in module fsl.utils.idle)
initialise() (in module fsl.utils.settings)
inm() (fsl.wrappers.fslmaths.fslmaths method)
inSSHSession() (fsl.utils.platform.Platform property)
Instanceify (class in fsl.utils.memoize)
intent() (fsl.data.image.Nifti property)
intlist() (in module fsl.scripts.resample_image)
invalidate() (fsl.utils.memoize.Memoize method)
InvalidLabelFileError
invert() (in module fsl.transform.affine)
inVNCSession() (fsl.utils.platform.Platform property)
invwarp() (in module fsl.wrappers.fnirt)
invxfm() (in module fsl.wrappers.flirt)
isAllEnabled() (fsl.utils.notifier.Notifier method)
iscomplex() (fsl.data.image.Image property)
isDTIFitPath() (in module fsl.data.dtifit)
isEnabled() (fsl.utils.notifier.Notifier method)
isFEATDir() (in module fsl.data.featanalysis)
isFEATImage() (in module fsl.data.featanalysis)
isFirstLevelAnalysis() (fsl.data.featimage.FEATImage method)
(in module fsl.data.featanalysis)
isMelodicDir() (in module fsl.data.melodicanalysis)
isMelodicImage() (in module fsl.data.melodicanalysis)
isNeurological() (fsl.data.image.Nifti method)
isNoisyComponent() (in module fsl.data.fixlabels)
isQueued() (fsl.utils.idle.TaskThread method)
isValidFancySliceObj() (in module fsl.data.imagewrapper)
K
knotSpacing() (fsl.transform.nonlinear.CoefficientField property)
L
L1() (fsl.data.dtifit.DTIFitTensor method)
L2() (fsl.data.dtifit.DTIFitTensor method)
L3() (fsl.data.dtifit.DTIFitTensor method)
label() (fsl.data.atlases.LabelAtlas method)
LabelAtlas (class in fsl.data.atlases)
labelNames() (in module fsl.scripts.atlasq)
list_all_trees() (in module fsl.utils.filetree.parse)
listAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
(in module fsl.scripts.atlasq)
listFiles() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
LOAD (in module fsl.wrappers.wrapperutils)
load() (fsl.data.volumelabels.VolumeLabels method)
load_pickle() (fsl.utils.filetree.filetree.FileTree class method)
loadAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
loadClusterResults() (in module fsl.data.featanalysis)
loadConfoundFiles() (in module fsl.scripts.fsl_ents)
loadContrasts() (in module fsl.data.featanalysis)
loadData() (fsl.data.image.Image method)
(fsl.data.imagewrapper.ImageWrapper method)
loadDesign() (in module fsl.data.featanalysis)
loadDesignMat() (in module fsl.data.featdesign)
loadGiftiMesh() (in module fsl.data.gifti)
loadGiftiVertexData() (in module fsl.data.gifti)
loadIndexedImageFile() (in module fsl.data.image)
loadLabelFile() (in module fsl.data.fixlabels)
loadSeries() (in module fsl.data.dicom)
loadSettings() (in module fsl.data.featanalysis)
loadVertexData() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVertexDataFile() (in module fsl.data.freesurfer)
loadVertices() (fsl.data.freesurfer.FreesurferMesh method)
(fsl.data.gifti.GiftiMesh method)
(fsl.data.mesh.Mesh method)
loadVestLutFile() (in module fsl.data.vest)
loadVTKPolydataFile() (in module fsl.data.vtk)
looksLikeImage() (in module fsl.data.image)
looksLikeTensorImage() (in module fsl.data.dtifit)
looksLikeVestLutFile() (in module fsl.data.vest)
M
main() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_apply_x5)
(in module fsl.scripts.fsl_convert_x5)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.imcp)
(in module fsl.scripts.imglob)
(in module fsl.scripts.immv)
(in module fsl.scripts.resample_image)
makeWriteable() (in module fsl.data.utils)
mapIndices() (fsl.data.image.Nifti method)
mas() (fsl.wrappers.fslmaths.fslmaths method)
MaskError
maskLabel() (fsl.data.atlases.LabelAtlas method)
maskProportions() (fsl.data.atlases.StatisticAtlas method)
maskQuery() (in module fsl.scripts.atlasq)
maskValues() (fsl.data.atlases.StatisticAtlas method)
Match (class in fsl.utils.filetree.query)
mcflirt() (in module fsl.wrappers.flirt)
melodic() (in module fsl.wrappers.melodic)
MelodicImage (class in fsl.data.melodicimage)
Memoize (class in fsl.utils.memoize)
memoize() (in module fsl.utils.memoize)
memoizeMD5() (in module fsl.utils.memoize)
Mesh (class in fsl.data.mesh)
Mesh() (in module fsl.utils.parse_data)
Meta (class in fsl.utils.meta)
metaItems() (fsl.utils.meta.Meta method)
metaKeys() (fsl.utils.meta.Meta method)
metaValues() (fsl.utils.meta.Meta method)
MGHImage (class in fsl.data.mghimage)
mghImageFile() (fsl.data.mghimage.MGHImage property)
MIN_DCM2NIIX_VERSION (in module fsl.data.dicom)
MissingVariable
modelFit() (in module fsl.data.featimage)
MotionParameterEV (class in fsl.data.featdesign)
mul() (fsl.wrappers.fslmaths.fslmaths method)
mutex() (in module fsl.utils.idle)
MutexFactory (class in fsl.utils.idle)
N
name() (fsl.data.bitmap.Bitmap property)
(fsl.data.mesh.Mesh property)
(fsl.utils.filetree.filetree.FileTree property)
namedPositionals() (in module fsl.wrappers.wrapperutils)
naninfrange() (in module fsl.utils.naninfrange)
ndim() (fsl.data.image.Nifti property)
nearestVertex() (fsl.data.mesh.Mesh method)
needsFixing() (in module fsl.data.mesh)
nibImage() (fsl.data.image.Image property)
Nifti (class in fsl.data.image)
NIFTI_XFORM_ALIGNED_ANAT (in module fsl.data.constants)
NIFTI_XFORM_ANALYZE (in module fsl.data.constants)
NIFTI_XFORM_MNI_152 (in module fsl.data.constants)
NIFTI_XFORM_SCANNER_ANAT (in module fsl.data.constants)
NIFTI_XFORM_TALAIRACH (in module fsl.data.constants)
NIFTI_XFORM_UNKNOWN (in module fsl.data.constants)
niftiVersion() (fsl.data.image.Nifti property)
NonLinearTransform (class in fsl.transform.nonlinear)
NormalEV (class in fsl.data.featdesign)
normalise() (in module fsl.transform.affine)
normals() (fsl.data.mesh.Mesh property)
Notifier (class in fsl.utils.notifier)
notify() (fsl.utils.notifier.Notifier method)
numComponents() (fsl.data.melodicimage.MelodicImage method)
(fsl.data.volumelabels.VolumeLabels method)
numContrasts() (fsl.data.featimage.FEATImage method)
numEVs() (fsl.data.featimage.FEATImage method)
numPoints() (fsl.data.featimage.FEATImage method)
nvals() (fsl.data.image.Image property)
nvertices() (fsl.data.mesh.Mesh property)
O
ohi() (in module fsl.scripts.atlasq)
on_disk() (fsl.utils.filetree.filetree.FileTree method)
optional_variables() (in module fsl.utils.filetree.utils)
ORIENT_A2P (in module fsl.data.constants)
ORIENT_I2S (in module fsl.data.constants)
ORIENT_L2R (in module fsl.data.constants)
ORIENT_P2A (in module fsl.data.constants)
ORIENT_R2L (in module fsl.data.constants)
ORIENT_S2I (in module fsl.data.constants)
ORIENT_UNKNOWN (in module fsl.data.constants)
os() (fsl.utils.platform.Platform property)
output() (fsl.wrappers.wrapperutils._FileOrThing._Results property)
(in module fsl.utils.fslsub)
OVERLAP_ALL (in module fsl.data.imagewrapper)
OVERLAP_NONE (in module fsl.data.imagewrapper)
OVERLAP_SOME (in module fsl.data.imagewrapper)
P
parent() (fsl.utils.filetree.filetree.FileTree property)
parseArgs() (in module fsl.scripts.atlasq)
(in module fsl.scripts.fsl_apply_x5)
(in module fsl.scripts.fsl_convert_x5)
(in module fsl.scripts.fsl_ents)
(in module fsl.scripts.resample_image)
parseVersionString() (in module fsl.version)
partialFit() (fsl.data.featimage.FEATImage method)
patchVersion() (in module fsl.version)
PathError
,
[1]
pixdim() (fsl.data.image.Nifti property)
planeIntersection() (fsl.data.mesh.Mesh method)
Platform (class in fsl.utils.platform)
platform (in module fsl.utils.platform)
prepareGiftiVertexData() (in module fsl.data.gifti)
prepareMask() (fsl.data.atlases.Atlas method)
printColumns() (in module fsl.scripts.atlasq)
ProbabilisticAtlas (class in fsl.data.atlases)
proportions() (fsl.data.atlases.StatisticAtlas method)
put() (fsl.utils.cache.Cache method)
Q
query() (fsl.utils.filetree.query.FileTreeQuery method)
queryAtlas() (in module fsl.scripts.atlasq)
queryLongOutput() (in module fsl.scripts.atlasq)
queryShortOutput() (in module fsl.scripts.atlasq)
R
rayIntersection() (fsl.data.mesh.Mesh method)
read() (fsl.utils.filetree.filetree.FileTree class method)
(fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
read_line() (in module fsl.utils.filetree.parse)
read_subtree_line() (in module fsl.utils.filetree.parse)
readAll() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
readFlirt() (in module fsl.transform.flirt)
readFnirt() (in module fsl.transform.fnirt)
readLinearX5() (in module fsl.transform.x5)
readNonLinearX5() (in module fsl.transform.x5)
recip() (fsl.wrappers.fslmaths.fslmaths method)
ref() (fsl.transform.nonlinear.NonLinearTransform property)
refSpace() (fsl.transform.nonlinear.NonLinearTransform property)
refToFieldMat() (fsl.transform.nonlinear.CoefficientField property)
refToSrcMat() (fsl.transform.nonlinear.CoefficientField property)
register() (fsl.utils.notifier.Notifier method)
register_tree() (in module fsl.utils.filetree.filetree)
Registered
relatedFiles() (in module fsl.data.gifti)
relatedGeometryFiles() (in module fsl.data.freesurfer)
relatedVertexDataFiles() (in module fsl.data.freesurfer)
relative() (fsl.transform.nonlinear.DeformationField property)
rem() (fsl.wrappers.fslmaths.fslmaths method)
removeAtlas() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
removeComponent() (fsl.data.volumelabels.VolumeLabels method)
removeDuplicates() (in module fsl.utils.path)
removeExt() (in module fsl.data.image)
(in module fsl.utils.path)
removeLabel() (fsl.data.volumelabels.VolumeLabels method)
resample() (fsl.data.image.Image method)
(in module fsl.utils.image.resample)
resampleToPixdims() (in module fsl.utils.image.resample)
resampleToReference() (in module fsl.utils.image.resample)
rescanAtlases() (fsl.data.atlases.AtlasRegistry method)
(in module fsl.data.atlases)
reset() (fsl.data.imagewrapper.ImageWrapper method)
resetWarningCache() (in module fsl.utils.deprecated)
resolve() (in module fsl.utils.filetree.utils)
resolve_optionals() (in module fsl.utils.filetree.utils)
rmsdev() (in module fsl.transform.affine)
robustfov() (in module fsl.wrappers.bet)
roi() (in module fsl.utils.image.roi)
rotMatToAffine() (in module fsl.transform.affine)
rotMatToAxisAngles() (in module fsl.transform.affine)
run() (fsl.utils.idle.TaskThread method)
(fsl.wrappers.fslmaths.fslmaths method)
(in module fsl.utils.idle)
(in module fsl.utils.run)
runfsl() (in module fsl.utils.run)
S
sameSpace() (fsl.data.image.Nifti method)
sanitiseList() (in module fsl.scripts.resample_image)
save() (fsl.data.image.Image method)
(fsl.data.mghimage.MGHImage method)
(fsl.data.volumelabels.VolumeLabels method)
save_pickle() (fsl.utils.filetree.filetree.FileTree method)
saveLabelFile() (in module fsl.data.fixlabels)
saveState() (fsl.data.image.Image property)
scaledVoxToVoxMat() (fsl.data.image.Nifti property)
scaleOffsetXform() (in module fsl.transform.affine)
scan() (in module fsl.utils.filetree.query)
scanDir() (in module fsl.data.dicom)
search_tree() (in module fsl.utils.filetree.parse)
selectedVertices() (fsl.data.mesh.Mesh method)
seriesCRC() (in module fsl.data.dicom)
set() (in module fsl.utils.settings)
setIdleTimeout() (in module fsl.utils.idle)
setMeta() (fsl.utils.meta.Meta method)
Settings (class in fsl.utils.settings)
sformToFlirtMatrix() (in module fsl.transform.flirt)
shallowest() (in module fsl.utils.path)
shape() (fsl.data.bitmap.Bitmap property)
(fsl.data.image.Nifti property)
(fsl.data.imagewrapper.ImageWrapper property)
short_name() (fsl.utils.filetree.query.Match property)
short_names() (fsl.utils.filetree.query.FileTreeQuery property)
SHOW_IF_TRUE (in module fsl.wrappers.wrapperutils)
sigloss() (in module fsl.wrappers.fugue)
skip() (fsl.utils.notifier.Notifier method)
skipAll() (fsl.utils.notifier.Notifier method)
skipUnchanged() (in module fsl.utils.memoize)
sliceCovered() (in module fsl.data.imagewrapper)
sliceObjToSliceTuple() (in module fsl.data.imagewrapper)
sliceOverlap() (in module fsl.data.imagewrapper)
slicer() (in module fsl.wrappers.misc)
sliceTupleToSliceObj() (in module fsl.data.imagewrapper)
splitExt() (in module fsl.data.image)
(in module fsl.utils.path)
src() (fsl.transform.nonlinear.NonLinearTransform property)
srcSpace() (fsl.transform.nonlinear.NonLinearTransform property)
srcToRefMat() (fsl.transform.nonlinear.CoefficientField property)
StatisticAtlas (class in fsl.data.atlases)
stop() (fsl.utils.idle.TaskThread method)
strval() (fsl.data.image.Nifti method)
sub() (fsl.wrappers.fslmaths.fslmaths method)
submit() (in module fsl.utils.fslsub)
summariseAtlas() (in module fsl.scripts.atlasq)
surfToVoxMat() (fsl.data.mghimage.MGHImage property)
surfToWorldMat() (fsl.data.mghimage.MGHImage property)
T
Task (class in fsl.utils.idle)
TaskThread (class in fsl.utils.idle)
TaskThreadVeto
tempdir() (in module fsl.utils.tempdir)
template() (fsl.utils.filetree.query.Match property)
template_variables() (fsl.utils.filetree.filetree.FileTree method)
templates() (fsl.utils.filetree.query.FileTreeQuery property)
TemporalDerivativeEV (class in fsl.data.featdesign)
tensorToComponents() (in module fsl.data.dtifit)
tensorToEigendecomposition() (in module fsl.data.dtifit)
thr() (fsl.wrappers.fslmaths.fslmaths method)
thresholds() (fsl.data.featimage.FEATImage method)
timeUnits() (fsl.data.image.Nifti property)
Tmax() (fsl.wrappers.fslmaths.fslmaths method)
Tmean() (fsl.wrappers.fslmaths.fslmaths method)
Tmin() (fsl.wrappers.fslmaths.fslmaths method)
toFlirt() (in module fsl.transform.flirt)
toFnirt() (in module fsl.transform.fnirt)
topup() (in module fsl.wrappers.eddy)
tr() (fsl.data.melodicimage.MelodicImage property)
transform() (fsl.transform.nonlinear.CoefficientField method)
(fsl.transform.nonlinear.DeformationField method)
(fsl.transform.nonlinear.NonLinearTransform method)
(in module fsl.transform.affine)
transformNormal() (in module fsl.transform.affine)
tree() (fsl.utils.filetree.query.FileTreeQuery property)
(fsl.utils.filetree.query.Match property)
trimesh() (fsl.data.mesh.Mesh property)
Tstd() (fsl.wrappers.fslmaths.fslmaths method)
U
uniquePrefix() (in module fsl.utils.path)
update() (fsl.utils.filetree.filetree.FileTree method)
use() (in module fsl.utils.settings)
uthr() (fsl.wrappers.fslmaths.fslmaths method)
V
V1() (fsl.data.dtifit.DTIFitTensor method)
V2() (fsl.data.dtifit.DTIFitTensor method)
V3() (fsl.data.dtifit.DTIFitTensor method)
values() (fsl.data.atlases.StatisticAtlas method)
variables() (fsl.utils.filetree.query.FileTreeQuery method)
(fsl.utils.filetree.query.Match property)
veclength() (in module fsl.transform.affine)
VERTEX_ANNOT_FILES (in module fsl.data.freesurfer)
VERTEX_DATA_FILES (in module fsl.data.freesurfer)
VERTEX_LABEL_FILES (in module fsl.data.freesurfer)
VERTEX_MGH_FILES (in module fsl.data.freesurfer)
vertexDataSets() (fsl.data.mesh.Mesh method)
vertexSets() (fsl.data.mesh.Mesh method)
vertices() (fsl.data.mesh.Mesh property)
vnormals() (fsl.data.mesh.Mesh property)
VolumeLabels (class in fsl.data.volumelabels)
VoxelwiseConfoundEV (class in fsl.data.featdesign)
VoxelwiseEV (class in fsl.data.featdesign)
VoxelwiseEVMixin (class in fsl.data.featdesign)
voxToScaledVoxMat() (fsl.data.image.Nifti property)
voxToSurfMat() (fsl.data.mghimage.MGHImage property)
voxToWorldMat() (fsl.data.image.Image property)
(fsl.data.image.Nifti property)
VTKMesh (class in fsl.data.vtk)
W
wait() (in module fsl.utils.fslsub)
(in module fsl.utils.idle)
(in module fsl.utils.run)
waitUntilIdle() (fsl.utils.idle.TaskThread method)
warn() (in module fsl.utils.deprecated)
WeakFunctionRef (class in fsl.utils.weakfuncref)
worldToSurfMat() (fsl.data.mghimage.MGHImage property)
worldToVoxMat() (fsl.data.image.Nifti property)
write() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeConfigFile() (fsl.utils.settings.Settings method)
writeFile() (fsl.utils.settings.Settings method)
(in module fsl.utils.settings)
writeFlirt() (in module fsl.transform.flirt)
writeLinearX5() (in module fsl.transform.x5)
writeNonLinearX5() (in module fsl.transform.x5)
WX_GTK (in module fsl.utils.platform)
WX_MAC_CARBON (in module fsl.utils.platform)
WX_MAC_COCOA (in module fsl.utils.platform)
WX_PHOENIX (in module fsl.utils.platform)
WX_PYTHON (in module fsl.utils.platform)
WX_UNKNOWN (in module fsl.utils.platform)
wxFlavour() (fsl.utils.platform.Platform property)
wxPlatform() (fsl.utils.platform.Platform property)
X
X5Error
X5ToFlirt() (in module fsl.scripts.fsl_convert_x5)
X5ToFnirt() (in module fsl.scripts.fsl_convert_x5)
xyzUnits() (fsl.data.image.Nifti property)