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A

add(int, int, int, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
Handles the addition of lines to source.
addLine(QSequenceLine) - Method in interface de.regnis.q.sequence.line.QSequenceLineCache
 
addLine(QSequenceLine) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
addLine(QSequenceLine) - Method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
append(int, byte) - Method in class de.regnis.q.sequence.line.QSequenceLineReader
 
assertEquals(int, int) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
assertEquals(long, long) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
ASSERTIONS - Static variable in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
assertNotNull(Object) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
assertNotNull(Object, String) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
assertTrue(boolean) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
assertTrue(boolean, String) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 

B

backwardDeePathExtender - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
blocks - Variable in class de.regnis.q.sequence.line.QSequenceLineResult
 
buffer - Variable in class de.regnis.q.sequence.line.QSequenceLineReader
 
bytes - Variable in class de.regnis.q.sequence.line.QSequenceLineRAByteData
 

C

canceller - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
canceller - Variable in class de.regnis.q.sequence.media.QSequenceIntMedia
 
change(int, int, QSequenceLineCache, int, int, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
Handles a change of a range of lines in target to a range of lines in source.
checkBackwardOverlapping(int, int, int) - Static method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
checkCancelled() - Method in interface de.regnis.q.sequence.core.QSequenceCanceller
 
checkCancelled() - Method in class de.regnis.q.sequence.core.QSequenceDummyCanceller
 
checkCancelled() - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
checkForwardOverlapping(int, int, int) - Static method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
close() - Method in interface de.regnis.q.sequence.line.QSequenceLineCache
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineFixedTempDirectoryFactory
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineResult
 
close() - Method in class de.regnis.q.sequence.line.QSequenceLineSystemTempDirectoryFactory
 
close() - Method in interface de.regnis.q.sequence.line.QSequenceLineTempDirectoryFactory
 
combineBlocks(List, int) - Static method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
commands - Variable in class de.regnis.q.sequence.QSequenceSimpleLCS
 
compareBytes - Variable in class de.regnis.q.sequence.line.QSequenceLine
 
comparer - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
contentBytes - Variable in class de.regnis.q.sequence.line.QSequenceLine
 
create(QSequenceLineRAData, QSequenceLineTempDirectoryFactory, int, int, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
create(InputStream) - Static method in class de.regnis.q.sequence.line.QSequenceLineRAByteData
 
createBlocks(QSequenceLineRAData, QSequenceLineRAData) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
createBlocks(QSequenceLineRAData, QSequenceLineRAData, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
createBlocks(QSequenceLineRAData, QSequenceLineRAData, int, int, double, QSequenceLineTempDirectoryFactory, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
createBlocks(boolean[], boolean[], QSequenceCommonBlockFactory) - Static method in class de.regnis.q.sequence.QSequenceCommonBlocks
 
createBlocksInFilesystem(QSequenceLineRAData, QSequenceLineRAData, QSequenceLineTempDirectoryFactory, double, int, int, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
createBlocksInMemory(InputStream, InputStream, double, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
createCommonBlock(int, int, int, int) - Method in interface de.regnis.q.sequence.QSequenceCommonBlockFactory
 
createCommonBlock(int, int, int, int) - Method in class de.regnis.q.sequence.QSequenceDifference
 
createCopy(List) - Static method in class de.regnis.q.sequence.QSequenceDifferenceBlockUtils
 
createCopy(QSequenceDifferenceBlock) - Static method in class de.regnis.q.sequence.QSequenceDifferenceBlockUtils
 
createDiscardableMarkers(int[], int[], QSequenceDiscardingMediaConfusionDetector) - Static method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
createDistinctBlock(int, int, int, int) - Method in interface de.regnis.q.sequence.QSequenceCommonBlockFactory
 
createDistinctBlock(int, int, int, int) - Method in class de.regnis.q.sequence.QSequenceDifference
 
createEquivalences(int[], QSequenceIntMedia) - Static method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
createGenerator(Map) - Method in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
createGenerator(Map) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
createGenerator(Map) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
createRandomAccessFile(File, String) - Static method in class de.regnis.q.sequence.line.QSequenceLineRandomAccessFileFactory
 
createSymbols(QSequenceCachableMedia, QSequenceCachableMediaGetter) - Method in class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 

D

data - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
de.regnis.q.sequence - package de.regnis.q.sequence
 
de.regnis.q.sequence.core - package de.regnis.q.sequence.core
 
de.regnis.q.sequence.line - package de.regnis.q.sequence.line
 
de.regnis.q.sequence.line.diff - package de.regnis.q.sequence.line.diff
 
de.regnis.q.sequence.line.simplifier - package de.regnis.q.sequence.line.simplifier
 
de.regnis.q.sequence.media - package de.regnis.q.sequence.media
 
DEFAULT_TYPE - Static variable in class de.regnis.q.sequence.line.diff.QDiffManager
 
delete(int, int, int, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
Handles a delete of lines from the target.
delta - Variable in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
delta - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
determineBestSnake(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
determineMiddleSnake(QSequenceMedia) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
discardAbsolutes - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMediaNoConfusionDectector
 
displayWhiteSpace(String) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 

E

EOL_PROPERTY - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
equals(int, int) - Method in interface de.regnis.q.sequence.core.QSequenceMedia
 
equals(int, int) - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
equals(Object) - Method in class de.regnis.q.sequence.line.QSequenceLine
 
equals(int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
equals(int, int) - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
equals(int, int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
equalsLeft(int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
equalsLeft(int, int) - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
equalsLeft(int, int) - Method in interface de.regnis.q.sequence.media.QSequenceMediaComparer
 
equalsRight(int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
equalsRight(int, int) - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
equalsRight(int, int) - Method in interface de.regnis.q.sequence.media.QSequenceMediaComparer
 
error(String) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
extendDeePath(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 

F

fatal(String) - Static method in class de.regnis.q.sequence.core.QSequenceAssert
 
file - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
FILE_SEGMENT_SIZE - Static variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
filePath - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
fileToRaFile - Static variable in class de.regnis.q.sequence.line.QSequenceLineRandomAccessFileFactory
 
finder - Variable in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
first - Variable in class de.regnis.q.sequence.line.simplifier.QSequenceLineTeeSimplifier
 
forwardDeePathExtender - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
from - Variable in class de.regnis.q.sequence.line.QSequenceLine
 
from - Variable in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
froms - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 

G

generateBinaryDiff(InputStream, InputStream, String, Writer) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateBinaryDiff(InputStream, InputStream, String, Writer, QDiffGenerator) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
generateBinaryDiff(InputStream, InputStream, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
generateDiffHeader(String, String, String, Writer) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateDiffHeader(String, String, String, Writer, QDiffGenerator) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
generateDiffHeader(String, String, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
generateDiffHeader(String, String, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
generateTextDiff(InputStream, InputStream, String, Writer) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateTextDiff(RandomAccessFile, RandomAccessFile, String, Writer) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateTextDiff(RandomAccessFile, RandomAccessFile, OutputStream) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateTextDiff(QSequenceLineRAData, QSequenceLineRAData, String, Writer) - Method in interface de.regnis.q.sequence.line.diff.QDiffGenerator
 
generateTextDiff(InputStream, InputStream, String, Writer, QDiffGenerator) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
generateTextDiff(RandomAccessFile, RandomAccessFile, String, Writer, QDiffGenerator) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
generateTextDiff(RandomAccessFile, RandomAccessFile, OutputStream, QDiffGenerator) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
generateTextDiff(InputStream, InputStream, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
generateTextDiff(QSequenceLineRAData, QSequenceLineRAData, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
generateTextDiff(QSequenceLineRAData, QSequenceLineRAData, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
generateTextDiff(RandomAccessFile, RandomAccessFile, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
generateTextDiff(RandomAccessFile, RandomAccessFile, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
get(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
get(byte[], long, long) - Method in class de.regnis.q.sequence.line.QSequenceLineRAByteData
 
get(byte[], long, long) - Method in interface de.regnis.q.sequence.line.QSequenceLineRAData
 
get(byte[], long, long) - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
getAllSymbols(QSequenceIntMedia) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
getAllSymbols(QSequenceIntMedia) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaLeftBlock
 
getAllSymbols(QSequenceIntMedia) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaRightBlock
 
getBestBackwardDiagonal(int, int) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
getBestForwardDiagonal(int, int) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
getBlocks() - Method in class de.regnis.q.sequence.line.QSequenceLineResult
 
getBlocks() - Method in class de.regnis.q.sequence.QSequenceDifference
 
getBytes() - Method in class de.regnis.q.sequence.line.QSequenceLine
Deprecated. 
getCommands() - Method in class de.regnis.q.sequence.QSequenceSimpleLCS
 
getCompareHash() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
getContentBytes() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
getContentLength() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
getDiffGenerator(String, Map) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
getEOL() - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
getFile() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
getFrom() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
getFrom(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
getFrom(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
getFrom() - Method in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
getGutter() - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
getHash(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
getHash(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
getHunkDelimiter() - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
getLeft(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getLeftCache() - Method in class de.regnis.q.sequence.line.QSequenceLineResult
 
getLeftFrom() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
getLeftFrom() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getLeftLength() - Method in interface de.regnis.q.sequence.core.QSequenceMedia
 
getLeftLength() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getLeftLength() - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
getLeftLength() - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
getLeftLength() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getLeftMax() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getLeftMin() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getLeftSize() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getLeftSymbols() - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
getLeftSymbols() - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
getLeftTo() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
getLeftTo() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getLength(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
getLength(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
getLine(int) - Method in interface de.regnis.q.sequence.line.QSequenceLineCache
 
getLine(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
getLine(int) - Method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
getLineCount() - Method in interface de.regnis.q.sequence.line.QSequenceLineCache
 
getLineCount() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
getLineCount() - Method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
getLineHash(int) - Method in interface de.regnis.q.sequence.line.QSequenceLineCache
 
getLineHash(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
getLineHash(int) - Method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
getMediaIndex(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
getMediaLeftIndex(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getMediaLeftIndex(int) - Method in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
getMediaLeftIndex(int) - Method in interface de.regnis.q.sequence.media.QSequenceMediaIndexTransformer
 
getMediaLeftLength() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getMediaLeftLength() - Method in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
getMediaLeftLength() - Method in interface de.regnis.q.sequence.media.QSequenceMediaIndexTransformer
 
getMediaLeftObject(int) - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
getMediaLeftObject(int) - Method in interface de.regnis.q.sequence.media.QSequenceCachableMedia
 
getMediaLength(QSequenceCachableMedia) - Method in interface de.regnis.q.sequence.media.QSequenceCachableMediaGetter
 
getMediaLength(QSequenceCachableMedia) - Method in class de.regnis.q.sequence.media.QSequenceCachableMediaLeftGetter
 
getMediaLength(QSequenceCachableMedia) - Method in class de.regnis.q.sequence.media.QSequenceCachableMediaRightGetter
 
getMediaObject(QSequenceCachableMedia, int) - Method in interface de.regnis.q.sequence.media.QSequenceCachableMediaGetter
 
getMediaObject(QSequenceCachableMedia, int) - Method in class de.regnis.q.sequence.media.QSequenceCachableMediaLeftGetter
 
getMediaObject(QSequenceCachableMedia, int) - Method in class de.regnis.q.sequence.media.QSequenceCachableMediaRightGetter
 
getMediaRightIndex(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getMediaRightIndex(int) - Method in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
getMediaRightIndex(int) - Method in interface de.regnis.q.sequence.media.QSequenceMediaIndexTransformer
 
getMediaRightLength() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getMediaRightLength() - Method in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
getMediaRightLength() - Method in interface de.regnis.q.sequence.media.QSequenceMediaIndexTransformer
 
getMediaRightObject(int) - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
getMediaRightObject(int) - Method in interface de.regnis.q.sequence.media.QSequenceCachableMedia
 
getNextX(QSequenceDeePathExtenderArray, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
getNextX(QSequenceDeePathExtenderArray, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getNextX(QSequenceDeePathExtenderArray, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathForwardExtender
 
getProgress(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
getProgress(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getProgress(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathForwardExtender
 
getProperties() - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
getResult() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
getRight(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getRightCache() - Method in class de.regnis.q.sequence.line.QSequenceLineResult
 
getRightFrom() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
getRightFrom() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getRightLength() - Method in interface de.regnis.q.sequence.core.QSequenceMedia
 
getRightLength() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getRightLength() - Method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
getRightLength() - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
getRightLength() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
getRightMax() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getRightMin() - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
getRightSize() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getRightSymbols() - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
getRightSymbols() - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
getRightTo() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
getRightTo() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
getSearchDepth(QSequenceLineMedia, double) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
getSegment(int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
getSimplifier() - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
getSnakeStartLeft() - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getSnakeStartRight() - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getSnakeX(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
getSnakeX(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
getSnakeX(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathForwardExtender
 
getSymbol(Object) - Method in class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 
getSymbolCount() - Method in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
getSymbolCount() - Method in class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 
getSymbolCount() - Method in class de.regnis.q.sequence.media.QSequenceIntMedia
 
getTempDirectory() - Method in class de.regnis.q.sequence.line.QSequenceLineFixedTempDirectoryFactory
 
getTempDirectory() - Method in class de.regnis.q.sequence.line.QSequenceLineSystemTempDirectoryFactory
 
getTempDirectory() - Method in interface de.regnis.q.sequence.line.QSequenceLineTempDirectoryFactory
 
getTo() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
getTo() - Method in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
getUndiscardedSymbolCount() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
getUndiscardedSymbols() - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
GUTTER_PROPERTY - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 

H

hashCode() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
hashes - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
header - Variable in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
HUNK_DELIMITER - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 

I

IGNORE_ALL_SPACE - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
IGNORE_EOL_PROPERTY - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
IGNORE_SPACE_CHANGE - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
IGNORE_SPACE_PROPERTY - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 
indexTransformer - Variable in class de.regnis.q.sequence.QSequenceDifference
 
init(QSequenceDiscardingMediaBlock, QSequenceDiscardingMediaConfusionDetector) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
init(int) - Method in interface de.regnis.q.sequence.media.QSequenceDiscardingMediaConfusionDetector
 
init(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaNoConfusionDectector
 
initProperties(Map) - Static method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
isAbsolute(int) - Method in interface de.regnis.q.sequence.media.QSequenceDiscardingMediaConfusionDetector
 
isAbsolute(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaNoConfusionDectector
 
isForwardAndBackwardOverlapping(int) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
isLeft() - Method in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
isLoaded() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
isProvisional(int) - Method in interface de.regnis.q.sequence.media.QSequenceDiscardingMediaConfusionDetector
 
isProvisional(int) - Method in class de.regnis.q.sequence.media.QSequenceDiscardingMediaNoConfusionDectector
 

J

joinBlocks(List) - Static method in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 

L

left - Variable in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
leftBlock - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
leftCache - Variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
leftCache - Variable in class de.regnis.q.sequence.line.QSequenceLineResult
 
leftCommonPoints - Variable in class de.regnis.q.sequence.QSequenceDifference
 
leftFrom - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
leftFrom - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
leftMax - Variable in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
leftMin - Variable in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
leftSymbols - Variable in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
leftTo - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
leftTo - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
length() - Method in class de.regnis.q.sequence.line.QSequenceLineRAByteData
 
length() - Method in interface de.regnis.q.sequence.line.QSequenceLineRAData
 
length() - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
length - Variable in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
lengths - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
lineCount - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
lines - Variable in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
load(RandomAccessFile) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 

M

mainMedia - Variable in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
map - Variable in class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 
maximumEntriesPerSegment - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
maximumEntryCount - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
maximumSearchDepth - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
maximumSearchDepth - Variable in class de.regnis.q.sequence.QSequenceDifference
 
maximumSegmentsInMemory - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
maybeUnloadSegments() - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
media - Variable in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
media - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
media - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
media - Variable in class de.regnis.q.sequence.QSequenceDifference
 
media - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
media - Variable in class de.regnis.q.sequence.QSequenceSimpleLCS
 
mediaLeftLength - Variable in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
mediaLeftLength - Variable in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
mediaRightLength - Variable in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
mediaRightLength - Variable in class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
MEMORY_THRESHOLD - Static variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
memorySegments - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
myFile - Variable in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
myGeneratorsCache - Variable in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
myGeneratorsCache - Variable in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
myProperties - Variable in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 

O

offset - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
offset - Variable in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
ourDiffGeneratorFactories - Static variable in class de.regnis.q.sequence.line.diff.QDiffManager
 

P

parseMemoryTreshold(String) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
print(QSequenceMedia, int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
print(String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
print(String, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
printLine(QSequenceLine, String) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
println(Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
println(OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
println(String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
println(String, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
printNoNewLine(Writer, String) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
printNoNewLine(OutputStream, byte[]) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
processBlock(int, int, QSequenceLineCache, int, int, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, String, Writer) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
processBlock(QSequenceDifferenceBlock[], QSequenceLineCache, QSequenceLineCache, OutputStream) - Method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
produceSnakesInOrder() - Method in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
produceSnakesInOrder(QSequenceRestrictedMedia) - Method in class de.regnis.q.sequence.core.QSequenceAlgorithm
 

Q

QDiffGenerator - Interface in de.regnis.q.sequence.line.diff
 
QDiffGeneratorFactory - Interface in de.regnis.q.sequence.line.diff
 
QDiffManager - Class in de.regnis.q.sequence.line.diff
 
QDiffManager() - Constructor for class de.regnis.q.sequence.line.diff.QDiffManager
 
QDiffNormalGenerator - Class in de.regnis.q.sequence.line.diff
 
QDiffNormalGenerator(Map) - Constructor for class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
QDiffNormalGenerator() - Constructor for class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
QDiffSequenceGenerator - Class in de.regnis.q.sequence.line.diff
 
QDiffSequenceGenerator(Map, String) - Constructor for class de.regnis.q.sequence.line.diff.QDiffSequenceGenerator
 
QDiffUniGenerator - Class in de.regnis.q.sequence.line.diff
 
QDiffUniGenerator(Map, String) - Constructor for class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
QDiffUniGenerator() - Constructor for class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
QSequenceAlgorithm - Class in de.regnis.q.sequence.core
 
QSequenceAlgorithm(QSequenceMedia, QSequenceSnakeRegister, int) - Constructor for class de.regnis.q.sequence.core.QSequenceAlgorithm
 
QSequenceAssert - Class in de.regnis.q.sequence.core
 
QSequenceAssert() - Constructor for class de.regnis.q.sequence.core.QSequenceAssert
 
QSequenceCachableMedia - Interface in de.regnis.q.sequence.media
 
QSequenceCachableMediaGetter - Interface in de.regnis.q.sequence.media
 
QSequenceCachableMediaLeftGetter - Class in de.regnis.q.sequence.media
 
QSequenceCachableMediaLeftGetter() - Constructor for class de.regnis.q.sequence.media.QSequenceCachableMediaLeftGetter
 
QSequenceCachableMediaRightGetter - Class in de.regnis.q.sequence.media
 
QSequenceCachableMediaRightGetter() - Constructor for class de.regnis.q.sequence.media.QSequenceCachableMediaRightGetter
 
QSequenceCachingMedia - Class in de.regnis.q.sequence.media
 
QSequenceCachingMedia(QSequenceCachableMedia, QSequenceCanceller) - Constructor for class de.regnis.q.sequence.media.QSequenceCachingMedia
 
QSequenceCachingMediaSymbolMap - Class in de.regnis.q.sequence.media
 
QSequenceCachingMediaSymbolMap(int) - Constructor for class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 
QSequenceCancelledException - Exception in de.regnis.q.sequence.core
 
QSequenceCancelledException() - Constructor for exception de.regnis.q.sequence.core.QSequenceCancelledException
 
QSequenceCanceller - Interface in de.regnis.q.sequence.core
 
QSequenceCommonBlockFactory - Interface in de.regnis.q.sequence
 
QSequenceCommonBlocks - Class in de.regnis.q.sequence
 
QSequenceCommonBlocks() - Constructor for class de.regnis.q.sequence.QSequenceCommonBlocks
 
QSequenceDeePathBackwardExtender - Class in de.regnis.q.sequence.core
 
QSequenceDeePathBackwardExtender(int, int) - Constructor for class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
QSequenceDeePathExtender - Class in de.regnis.q.sequence.core
 
QSequenceDeePathExtender(QSequenceDeePathExtenderArray) - Constructor for class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
QSequenceDeePathExtenderArray - Class in de.regnis.q.sequence.core
 
QSequenceDeePathExtenderArray(int) - Constructor for class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
QSequenceDeePathForwardExtender - Class in de.regnis.q.sequence.core
 
QSequenceDeePathForwardExtender(int, int) - Constructor for class de.regnis.q.sequence.core.QSequenceDeePathForwardExtender
 
QSequenceDifference - Class in de.regnis.q.sequence
 
QSequenceDifference(QSequenceMedia, QSequenceMediaIndexTransformer) - Constructor for class de.regnis.q.sequence.QSequenceDifference
 
QSequenceDifference(QSequenceMedia, QSequenceMediaIndexTransformer, int) - Constructor for class de.regnis.q.sequence.QSequenceDifference
 
QSequenceDifferenceBlock - Class in de.regnis.q.sequence
 
QSequenceDifferenceBlock(int, int, int, int) - Constructor for class de.regnis.q.sequence.QSequenceDifferenceBlock
 
QSequenceDifferenceBlockShifter - Class in de.regnis.q.sequence
 
QSequenceDifferenceBlockShifter(QSequenceMedia, QSequenceMediaComparer) - Constructor for class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
QSequenceDifferenceBlockUtils - Class in de.regnis.q.sequence
 
QSequenceDifferenceBlockUtils() - Constructor for class de.regnis.q.sequence.QSequenceDifferenceBlockUtils
 
QSequenceDiscardingMedia - Class in de.regnis.q.sequence.media
 
QSequenceDiscardingMedia(QSequenceIntMedia, QSequenceDiscardingMediaConfusionDetector, QSequenceCanceller) - Constructor for class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
QSequenceDiscardingMediaBlock - Class in de.regnis.q.sequence.media
 
QSequenceDiscardingMediaBlock(QSequenceIntMedia) - Constructor for class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
QSequenceDiscardingMediaConfusionDetector - Interface in de.regnis.q.sequence.media
 
QSequenceDiscardingMediaLeftBlock - Class in de.regnis.q.sequence.media
 
QSequenceDiscardingMediaLeftBlock(QSequenceIntMedia) - Constructor for class de.regnis.q.sequence.media.QSequenceDiscardingMediaLeftBlock
 
QSequenceDiscardingMediaNoConfusionDectector - Class in de.regnis.q.sequence.media
 
QSequenceDiscardingMediaNoConfusionDectector(boolean) - Constructor for class de.regnis.q.sequence.media.QSequenceDiscardingMediaNoConfusionDectector
 
QSequenceDiscardingMediaRightBlock - Class in de.regnis.q.sequence.media
 
QSequenceDiscardingMediaRightBlock(QSequenceIntMedia) - Constructor for class de.regnis.q.sequence.media.QSequenceDiscardingMediaRightBlock
 
QSequenceDummyCanceller - Class in de.regnis.q.sequence.core
 
QSequenceDummyCanceller() - Constructor for class de.regnis.q.sequence.core.QSequenceDummyCanceller
 
QSequenceException - Exception in de.regnis.q.sequence.core
 
QSequenceException() - Constructor for exception de.regnis.q.sequence.core.QSequenceException
 
QSequenceException(Throwable) - Constructor for exception de.regnis.q.sequence.core.QSequenceException
 
QSequenceIntMedia - Class in de.regnis.q.sequence.media
 
QSequenceIntMedia(QSequenceCanceller) - Constructor for class de.regnis.q.sequence.media.QSequenceIntMedia
 
QSequenceLine - Class in de.regnis.q.sequence.line
 
QSequenceLine(long, byte[], QSequenceLineSimplifier) - Constructor for class de.regnis.q.sequence.line.QSequenceLine
 
QSequenceLineCache - Interface in de.regnis.q.sequence.line
 
QSequenceLineDummySimplifier - Class in de.regnis.q.sequence.line.simplifier
 
QSequenceLineDummySimplifier() - Constructor for class de.regnis.q.sequence.line.simplifier.QSequenceLineDummySimplifier
 
QSequenceLineEOLUnifyingSimplifier - Class in de.regnis.q.sequence.line.simplifier
 
QSequenceLineEOLUnifyingSimplifier() - Constructor for class de.regnis.q.sequence.line.simplifier.QSequenceLineEOLUnifyingSimplifier
 
QSequenceLineFileSystemCache - Class in de.regnis.q.sequence.line
 
QSequenceLineFileSystemCache(QSequenceLineRAData, QSequenceLineTempDirectoryFactory, int, int, QSequenceLineSimplifier) - Constructor for class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
QSequenceLineFileSystemCacheSegment - Class in de.regnis.q.sequence.line
 
QSequenceLineFileSystemCacheSegment(long, int) - Constructor for class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
QSequenceLineFileSystemCacheSegments - Class in de.regnis.q.sequence.line
 
QSequenceLineFileSystemCacheSegments(QSequenceLineTempDirectoryFactory, int, int) - Constructor for class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
QSequenceLineFixedTempDirectoryFactory - Class in de.regnis.q.sequence.line
 
QSequenceLineFixedTempDirectoryFactory(File) - Constructor for class de.regnis.q.sequence.line.QSequenceLineFixedTempDirectoryFactory
 
QSequenceLineMedia - Class in de.regnis.q.sequence.line
 
QSequenceLineMedia(QSequenceLineCache, QSequenceLineCache) - Constructor for class de.regnis.q.sequence.line.QSequenceLineMedia
 
QSequenceLineMemoryCache - Class in de.regnis.q.sequence.line
 
QSequenceLineMemoryCache() - Constructor for class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
QSequenceLineRAByteData - Class in de.regnis.q.sequence.line
 
QSequenceLineRAByteData(byte[]) - Constructor for class de.regnis.q.sequence.line.QSequenceLineRAByteData
 
QSequenceLineRAData - Interface in de.regnis.q.sequence.line
 
QSequenceLineRAFileData - Class in de.regnis.q.sequence.line
 
QSequenceLineRAFileData(RandomAccessFile) - Constructor for class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
QSequenceLineRAFileDataStream - Class in de.regnis.q.sequence.line
 
QSequenceLineRAFileDataStream(RandomAccessFile, long, int) - Constructor for class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
QSequenceLineRandomAccessFileFactory - Class in de.regnis.q.sequence.line
 
QSequenceLineRandomAccessFileFactory() - Constructor for class de.regnis.q.sequence.line.QSequenceLineRandomAccessFileFactory
 
QSequenceLineReader - Class in de.regnis.q.sequence.line
 
QSequenceLineReader() - Constructor for class de.regnis.q.sequence.line.QSequenceLineReader
 
QSequenceLineReader(int) - Constructor for class de.regnis.q.sequence.line.QSequenceLineReader
 
QSequenceLineResult - Class in de.regnis.q.sequence.line
 
QSequenceLineResult(List, QSequenceLineCache, QSequenceLineCache) - Constructor for class de.regnis.q.sequence.line.QSequenceLineResult
 
QSequenceLineSimplifier - Interface in de.regnis.q.sequence.line.simplifier
 
QSequenceLineSystemTempDirectoryFactory - Class in de.regnis.q.sequence.line
 
QSequenceLineSystemTempDirectoryFactory() - Constructor for class de.regnis.q.sequence.line.QSequenceLineSystemTempDirectoryFactory
 
QSequenceLineTeeSimplifier - Class in de.regnis.q.sequence.line.simplifier
 
QSequenceLineTeeSimplifier(QSequenceLineSimplifier, QSequenceLineSimplifier) - Constructor for class de.regnis.q.sequence.line.simplifier.QSequenceLineTeeSimplifier
 
QSequenceLineTempDirectoryFactory - Interface in de.regnis.q.sequence.line
 
QSequenceLineWhiteSpaceReducingSimplifier - Class in de.regnis.q.sequence.line.simplifier
 
QSequenceLineWhiteSpaceReducingSimplifier() - Constructor for class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceReducingSimplifier
 
QSequenceLineWhiteSpaceSkippingSimplifier - Class in de.regnis.q.sequence.line.simplifier
 
QSequenceLineWhiteSpaceSkippingSimplifier() - Constructor for class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceSkippingSimplifier
 
QSequenceMedia - Interface in de.regnis.q.sequence.core
 
QSequenceMediaComparer - Interface in de.regnis.q.sequence.media
 
QSequenceMediaDummyIndexTransformer - Class in de.regnis.q.sequence.media
 
QSequenceMediaDummyIndexTransformer(QSequenceMedia) - Constructor for class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
QSequenceMediaDummyIndexTransformer(int, int) - Constructor for class de.regnis.q.sequence.media.QSequenceMediaDummyIndexTransformer
 
QSequenceMediaIndexTransformer - Interface in de.regnis.q.sequence.media
 
QSequenceMiddleSnakeFinder - Class in de.regnis.q.sequence.core
 
QSequenceMiddleSnakeFinder(int, int, int) - Constructor for class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
QSequenceMiddleSnakeFinderResult - Class in de.regnis.q.sequence.core
 
QSequenceMiddleSnakeFinderResult() - Constructor for class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
QSequenceRestrictedMedia - Class in de.regnis.q.sequence.core
 
QSequenceRestrictedMedia(QSequenceMedia) - Constructor for class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
QSequenceSimpleLCS - Class in de.regnis.q.sequence
 
QSequenceSimpleLCS(QSequenceMedia) - Constructor for class de.regnis.q.sequence.QSequenceSimpleLCS
 
QSequenceSimpleLCSCommand - Class in de.regnis.q.sequence
 
QSequenceSimpleLCSCommand(boolean, int, int) - Constructor for class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
QSequenceSnakeRegister - Interface in de.regnis.q.sequence.core
 

R

randomAccessFile - Variable in class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
read(InputStream, QSequenceLineSimplifier) - Static method in class de.regnis.q.sequence.line.QSequenceLineMemoryCache
 
read(long, long) - Method in class de.regnis.q.sequence.line.QSequenceLineRAByteData
 
read(long, long) - Method in interface de.regnis.q.sequence.line.QSequenceLineRAData
 
read(long, long) - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
read() - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
read(byte[], int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
read(InputStream, QSequenceLineCache, QSequenceLineSimplifier) - Method in class de.regnis.q.sequence.line.QSequenceLineReader
 
readLines(QSequenceLineRAData) - Static method in class de.regnis.q.sequence.line.QSequenceLineMedia
 
reduceWhiteSpaces(String) - Static method in class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceReducingSimplifier
 
registerDiffGeneratorFactory(QDiffGeneratorFactory, String) - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
registerSnake(QSequenceRestrictedMedia, int, int, int, int) - Method in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
registerSnake(int, int, int, int) - Method in interface de.regnis.q.sequence.core.QSequenceSnakeRegister
 
registerSnake(int, int, int, int) - Method in class de.regnis.q.sequence.QSequenceDifference
 
registerSnake(int, int, int, int) - Method in class de.regnis.q.sequence.QSequenceSimpleLCS
 
removeWhiteSpaces(String) - Static method in class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceSkippingSimplifier
 
reset(QSequenceMedia, QSequenceDeePathExtenderArray) - Method in class de.regnis.q.sequence.core.QSequenceDeePathBackwardExtender
 
reset(QSequenceMedia, QSequenceDeePathExtenderArray) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
reset(QSequenceMedia) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
reset(QSequenceMedia, QSequenceDeePathExtenderArray) - Method in class de.regnis.q.sequence.core.QSequenceDeePathForwardExtender
 
reset() - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
reset(long, int) - Method in class de.regnis.q.sequence.line.QSequenceLineRAFileDataStream
 
restrictTo(int, int, int, int) - Method in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
result - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
rightBlock - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
rightCache - Variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
rightCache - Variable in class de.regnis.q.sequence.line.QSequenceLineResult
 
rightCommonPoints - Variable in class de.regnis.q.sequence.QSequenceDifference
 
rightFrom - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
rightFrom - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
rightMax - Variable in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
rightMin - Variable in class de.regnis.q.sequence.core.QSequenceRestrictedMedia
 
rightSymbols - Variable in class de.regnis.q.sequence.media.QSequenceCachingMedia
 
rightTo - Variable in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
rightTo - Variable in class de.regnis.q.sequence.QSequenceDifferenceBlock
 

S

SEARCH_DEPTH_EXPONENT - Static variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
second - Variable in class de.regnis.q.sequence.line.simplifier.QSequenceLineTeeSimplifier
 
SEGMENT_ENTRY_SIZE - Static variable in class de.regnis.q.sequence.line.QSequenceLineMedia
 
segmentIndex - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
segments - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
segments - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
set(int, int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
setDelta(int) - Method in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
setFromLengthHash(int, long, int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 
setFromLengthHash(int, long, int, int) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
setLeftFrom(int) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
setLeftTo(int) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
setMiddleSnake(QSequenceMiddleSnakeFinderResult, QSequenceDeePathExtender, int) - Static method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinder
 
setMiddleSnake(int, int, int, int) - Method in class de.regnis.q.sequence.core.QSequenceMiddleSnakeFinderResult
 
setRightFrom(int) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
setRightTo(int) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
setup() - Static method in class de.regnis.q.sequence.line.diff.QDiffManager
 
setup() - Static method in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
setup() - Static method in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 
shiftBlocks(List) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
simplifier - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCache
 
simplify(byte[]) - Method in class de.regnis.q.sequence.line.simplifier.QSequenceLineDummySimplifier
 
simplify(byte[]) - Method in class de.regnis.q.sequence.line.simplifier.QSequenceLineEOLUnifyingSimplifier
 
simplify(byte[]) - Method in interface de.regnis.q.sequence.line.simplifier.QSequenceLineSimplifier
 
simplify(byte[]) - Method in class de.regnis.q.sequence.line.simplifier.QSequenceLineTeeSimplifier
 
simplify(byte[]) - Method in class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceReducingSimplifier
 
simplify(byte[]) - Method in class de.regnis.q.sequence.line.simplifier.QSequenceLineWhiteSpaceSkippingSimplifier
 
snakeRegister - Variable in class de.regnis.q.sequence.core.QSequenceAlgorithm
 
snakeStartLeft - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
snakeStartRight - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
stream - Variable in class de.regnis.q.sequence.line.QSequenceLineRAFileData
 
symbolCount - Variable in class de.regnis.q.sequence.media.QSequenceCachingMediaSymbolMap
 
symbolMap - Variable in class de.regnis.q.sequence.media.QSequenceCachingMedia
 

T

tempDirectory - Variable in class de.regnis.q.sequence.line.QSequenceLineFixedTempDirectoryFactory
 
tempDirectory - Variable in class de.regnis.q.sequence.line.QSequenceLineSystemTempDirectoryFactory
 
tempDirectoryFactory - Variable in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegments
 
to - Variable in class de.regnis.q.sequence.QSequenceSimpleLCSCommand
 
toString() - Method in class de.regnis.q.sequence.line.QSequenceLine
 
toString() - Method in class de.regnis.q.sequence.QSequenceDifferenceBlock
 
tryShiftDown(List, int) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
tryShiftUp(List, int, boolean) - Method in class de.regnis.q.sequence.QSequenceDifferenceBlockShifter
 
TYPE - Static variable in class de.regnis.q.sequence.line.diff.QDiffNormalGenerator
 
TYPE - Static variable in class de.regnis.q.sequence.line.diff.QDiffUniGenerator
 

U

undiscardedIndices - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
undiscardedLeftSymbolCount - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
undiscardedLeftSymbols - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
undiscardedRightSymbolCount - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
undiscardedRightSymbols - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMedia
 
undiscardedSymbolCount - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
undiscardedSymbols - Variable in class de.regnis.q.sequence.media.QSequenceDiscardingMediaBlock
 
unload(RandomAccessFile) - Method in class de.regnis.q.sequence.line.QSequenceLineFileSystemCacheSegment
 

W

WHITESPACE_PROPERTY - Static variable in interface de.regnis.q.sequence.line.diff.QDiffGeneratorFactory
 

X

xs - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtender
 
xs - Variable in class de.regnis.q.sequence.core.QSequenceDeePathExtenderArray
 
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