ADDITIONAL_ISOTOPES | TOPPMetaProSIP | protected |
calculateCorrelation(Size n_element, const vector< double > &isotopic_intensities, IsotopePatterns patterns, MapRateToScoreType &map_rate_to_correlation_score, String labeling_element, double mass, double min_correlation_distance_to_averagine) | TOPPMetaProSIP | inlineprotected |
calculateGlobalLR(const vector< double > &isotopic_intensities) | TOPPMetaProSIP | inlineprotected |
extractIncorporationsAtCorrelationMaxima(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_decomposition_weight=10.0) | TOPPMetaProSIP | inlineprotected |
extractIncorporationsAtHeighestDecompositionWeights(SIPPeptide &sip_peptide, const IsotopePatterns &patterns, double weight_merge_window=5.0, double min_corr_threshold=0.5, double min_low_RIA_threshold=-1, double min_decomposition_weight=10.0) | TOPPMetaProSIP | inlineprotected |
extractIsotopicIntensities(Size element_count, double mass_diff, double mz_tolerance_ppm, double seed_rt, double seed_mz, double seed_charge, const MSExperiment< Peak1D > &peak_map) | TOPPMetaProSIP | inlineprotected |
extractPeakSpectrum(Size element_count, double mass_diff, double rt, double feature_hit_theoretical_mz, Int feature_hit_charge, const MSExperiment<> &peak_map) | TOPPMetaProSIP | inlineprotected |
FEATURE_STRING | TOPPMetaProSIP | protected |
filterIsotopicIntensities(vector< double >::const_iterator &pattern_begin, vector< double >::const_iterator &pattern_end, vector< double >::const_iterator &intensities_begin, vector< double >::const_iterator &intensities_end, double TIC_threshold=0.99) | TOPPMetaProSIP | inlineprotected |
findApexRT(const FeatureMap::iterator feature_it, double hit_rt, const MSExperiment< Peak1D > &peak_map, Size n_scans) | TOPPMetaProSIP | inlineprotected |
getBestRateScorePair(const MapRateToScoreType &map_rate_to_score, double &best_rate, double &best_score) | TOPPMetaProSIP | inlineprotected |
isotopicIntensitiesToSpectrum(double mz_start, double mass_diff, Int charge, vector< double > isotopic_intensities) | TOPPMetaProSIP | inlineprotected |
main_(int, const char **) | TOPPMetaProSIP | inlineprotected |
mergeSpectra(const MSExperiment<> &to_merge) | TOPPMetaProSIP | inlineprotected |
normalizeToMax(const MapRateToScoreType &map_rate_to_decomposition_weight) | TOPPMetaProSIP | inlineprotected |
registerOptionsAndFlags_() | TOPPMetaProSIP | inlineprotected |
TOPPMetaProSIP() | TOPPMetaProSIP | inline |
UNASSIGNED_ID_STRING | TOPPMetaProSIP | protected |
UNIDENTIFIED_STRING | TOPPMetaProSIP | protected |
writePeakIntensities_(SVOutStream &out_stream, vector< double > isotopic_intensities, bool write_13Cpeaks) | TOPPMetaProSIP | inlineprotected |