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PeptideIndexer.cpp File Reference
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/METADATA/PeptideEvidence.h>
#include <OpenMS/CHEMISTRY/EnzymesDB.h>
#include <algorithm>

Classes

struct  PeptideProteinMatchInformation
 
struct  FoundProteinFunctor
 
struct  SAValue< Index< StringSet< Peptide >, IndexWotd<> > >
 
struct  EquivalenceClassAA_< T >
 

Namespaces

 seqan
 

Functions

template<bool enumerateA, bool enumerateB, typename TOnFoundFunctor , typename TTreeIteratorA , typename TIterPosA , typename TTreeIteratorB , typename TIterPosB , typename TErrors >
void _approximateAminoAcidTreeSearch (TOnFoundFunctor &onFoundFunctor, TTreeIteratorA iterA, TIterPosA iterPosA, TTreeIteratorB iterB_, TIterPosB iterPosB, TErrors errorsLeft, TErrors classErrorsLeft)
 
template<typename TEquivalenceTable >
bool _charComparator (AminoAcid charA, AminoAcid charB, TEquivalenceTable equivalence)
 

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Jan 27 2016 17:11:51 using doxygen 1.8.10