Package org.jmol.shapespecial
Class Polyhedron
- java.lang.Object
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- org.jmol.shapespecial.Polyhedron
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public class Polyhedron extends Object
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Field Summary
Fields Modifier and Type Field Description private javajs.util.BS
bsFlat
javajs.util.P3
center
Atom
centralAtom
short
colix
short
colixEdge
boolean
collapsed
private float
distanceRef
private int[]
elemNos
int[][]
faces
private int[][]
faceTriangles
String
id
(package private) Map<String,Object>
info
(package private) boolean
isFullyLit
boolean
isValid
int
modelIndex
private javajs.util.V3[]
normals
private short[]
normixes
(package private) int
nVertices
private javajs.util.P3
offset
(package private) javajs.util.P4[]
planes
private SymmetryInterface
pointGroup
includes vertices as atoms, with atomic numbersprivate SymmetryInterface
pointGroupFamily
includes vertices as generic pointsfloat
pointScale
String
polySmiles
float
scale
String
smarts
String
smiles
int[][]
triangles
javajs.util.P3[]
vertices
int
visibilityFlags
(package private) boolean
visible
private Float
volume
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Constructor Summary
Constructors Constructor Description Polyhedron()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int[]
getElemNos()
(package private) Map<String,Object>
getInfo(Viewer vwr, String property)
short[]
getNormixes()
(package private) String
getState(Viewer vwr)
(package private) String
getSymmetry(Viewer vwr, boolean withPointGroup)
private Float
getVolume()
allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code(package private) void
move(javajs.util.M4 mat, javajs.util.BS bsMoved)
(package private) Polyhedron
set(String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, javajs.util.BS bsFlat, boolean collapsed, float distanceRef, float pointScale)
(package private) Polyhedron
setInfo(Viewer vwr, Map<String,Object> info, Atom[] at)
(package private) void
setOffset(javajs.util.P3 value)
private int[][]
toInt2(boolean isSV, Object o)
private float
triangleArea(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)
private float
triangleVolume(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)
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Field Detail
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id
public String id
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center
public javajs.util.P3 center
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centralAtom
public Atom centralAtom
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vertices
public javajs.util.P3[] vertices
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triangles
public int[][] triangles
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faces
public int[][] faces
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nVertices
int nVertices
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collapsed
public boolean collapsed
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bsFlat
private javajs.util.BS bsFlat
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distanceRef
private float distanceRef
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normals
private javajs.util.V3[] normals
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normixes
private short[] normixes
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planes
javajs.util.P4[] planes
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smiles
public String smiles
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smarts
public String smarts
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polySmiles
public String polySmiles
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pointGroup
private SymmetryInterface pointGroup
includes vertices as atoms, with atomic numbers
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pointGroupFamily
private SymmetryInterface pointGroupFamily
includes vertices as generic points
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volume
private Float volume
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visible
boolean visible
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isFullyLit
boolean isFullyLit
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isValid
public boolean isValid
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colixEdge
public short colixEdge
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visibilityFlags
public int visibilityFlags
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colix
public short colix
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modelIndex
public int modelIndex
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offset
private javajs.util.P3 offset
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scale
public float scale
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pointScale
public float pointScale
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faceTriangles
private int[][] faceTriangles
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elemNos
private int[] elemNos
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Method Detail
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set
Polyhedron set(String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, javajs.util.BS bsFlat, boolean collapsed, float distanceRef, float pointScale)
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toInt2
private int[][] toInt2(boolean isSV, Object o)
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getElemNos
public int[] getElemNos()
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getVolume
private Float getVolume()
allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code- Returns:
- volume
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triangleArea
private float triangleArea(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)
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triangleVolume
private float triangleVolume(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)
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move
void move(javajs.util.M4 mat, javajs.util.BS bsMoved)
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getNormixes
public short[] getNormixes()
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setOffset
void setOffset(javajs.util.P3 value)
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