Package org.jmol.jvxl.data
Class JvxlData
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- org.jmol.jvxl.data.JvxlData
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public class JvxlData extends Object
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Field Summary
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Constructor Summary
Constructors Constructor Description JvxlData()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
clear()
void
jvxlUpdateInfo(String[] title, long nBytes)
void
setSurfaceInfo(javajs.util.P4 thePlane, javajs.util.P3 mapLattice, int nSurfaceInts, String surfaceData)
void
setSurfaceInfoFromBitSet(javajs.util.BS bs, javajs.util.P4 thePlane)
void
setSurfaceInfoFromBitSetPts(javajs.util.BS bs, javajs.util.P4 thePlane, javajs.util.P3 mapLattice)
static String
updateSurfaceData(String edgeData, float[] vertexValues, int vertexCount, int vertexIncrement, char isNaN)
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Field Detail
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msg
public String msg
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wasJvxl
public boolean wasJvxl
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wasCubic
public boolean wasCubic
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jvxlFileTitle
public String jvxlFileTitle
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jvxlFileMessage
public String jvxlFileMessage
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jvxlSurfaceData
public String jvxlSurfaceData
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jvxlEdgeData
public String jvxlEdgeData
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jvxlColorData
public String jvxlColorData
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jvxlVolumeDataXml
public String jvxlVolumeDataXml
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jvxlExcluded
public javajs.util.BS[] jvxlExcluded
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jvxlPlane
public javajs.util.P4 jvxlPlane
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isJvxlPrecisionColor
public boolean isJvxlPrecisionColor
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jvxlDataIsColorMapped
public boolean jvxlDataIsColorMapped
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jvxlDataIs2dContour
public boolean jvxlDataIs2dContour
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jvxlDataIsColorDensity
public boolean jvxlDataIsColorDensity
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isColorReversed
public boolean isColorReversed
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thisSet
public int thisSet
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edgeFractionBase
public int edgeFractionBase
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edgeFractionRange
public int edgeFractionRange
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colorFractionBase
public int colorFractionBase
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colorFractionRange
public int colorFractionRange
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isValid
public boolean isValid
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insideOut
public boolean insideOut
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isXLowToHigh
public boolean isXLowToHigh
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isContoured
public boolean isContoured
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isBicolorMap
public boolean isBicolorMap
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isTruncated
public boolean isTruncated
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isCutoffAbsolute
public boolean isCutoffAbsolute
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isModelConnected
public boolean isModelConnected
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vertexDataOnly
public boolean vertexDataOnly
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mappedDataMin
public float mappedDataMin
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mappedDataMax
public float mappedDataMax
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valueMappedToRed
public float valueMappedToRed
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valueMappedToBlue
public float valueMappedToBlue
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cutoff
public float cutoff
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pointsPerAngstrom
public float pointsPerAngstrom
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nPointsX
public int nPointsX
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nPointsY
public int nPointsY
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nPointsZ
public int nPointsZ
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nBytes
public long nBytes
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nContours
public int nContours
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nEdges
public int nEdges
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nSurfaceInts
public int nSurfaceInts
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vertexCount
public int vertexCount
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vContours
public javajs.util.Lst<Object>[] vContours
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contourColixes
public short[] contourColixes
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contourColors
public String contourColors
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contourValues
public float[] contourValues
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contourValuesUsed
public float[] contourValuesUsed
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thisContour
public int thisContour
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scale3d
public float scale3d
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minColorIndex
public short minColorIndex
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maxColorIndex
public short maxColorIndex
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title
public String[] title
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version
public String version
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boundingBox
public javajs.util.P3[] boundingBox
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excludedTriangleCount
public int excludedTriangleCount
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excludedVertexCount
public int excludedVertexCount
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colorDensity
public boolean colorDensity
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pointSize
public float pointSize
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moleculeXml
public String moleculeXml
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dataMin
public float dataMin
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dataMax
public float dataMax
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saveVertexCount
public int saveVertexCount
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nVertexColors
public int nVertexColors
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vertexColors
public int[] vertexColors
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color
public String color
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meshColor
public String meshColor
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translucency
public float translucency
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colorScheme
public String colorScheme
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rendering
public String rendering
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slabValue
public int slabValue
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isSlabbable
public boolean isSlabbable
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diameter
public int diameter
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slabInfo
public String slabInfo
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allowVolumeRender
public boolean allowVolumeRender
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voxelVolume
public float voxelVolume
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mapLattice
public javajs.util.P3 mapLattice
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fixedLattice
public javajs.util.P3 fixedLattice
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baseColor
public String baseColor
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integration
public float integration
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Method Detail
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clear
public void clear()
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setSurfaceInfo
public void setSurfaceInfo(javajs.util.P4 thePlane, javajs.util.P3 mapLattice, int nSurfaceInts, String surfaceData)
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setSurfaceInfoFromBitSet
public void setSurfaceInfoFromBitSet(javajs.util.BS bs, javajs.util.P4 thePlane)
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setSurfaceInfoFromBitSetPts
public void setSurfaceInfoFromBitSetPts(javajs.util.BS bs, javajs.util.P4 thePlane, javajs.util.P3 mapLattice)
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jvxlUpdateInfo
public void jvxlUpdateInfo(String[] title, long nBytes)
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