Package org.jmol.c
Enum STR
- java.lang.Object
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- java.lang.Enum<STR>
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- org.jmol.c.STR
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- All Implemented Interfaces:
Serializable
,Comparable<STR>
public enum STR extends Enum<STR>
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Enum Constant Summary
Enum Constants Enum Constant Description ANNOTATION
CARBOHYDRATE
DNA
HELIX
HELIX310
HELIXALPHA
HELIXPI
NONE
NOT
RNA
SHEET
TURN
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Constructor Summary
Constructors Modifier Constructor Description private
STR(int id, int color)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description String
getBioStructureTypeName(boolean isGeneric)
int
getColor()
int
getId()
static STR
getProteinStructureType(String name)
In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure.private boolean
isProtein()
static STR
valueOf(String name)
Returns the enum constant of this type with the specified name.static STR[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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NOT
public static final STR NOT
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NONE
public static final STR NONE
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TURN
public static final STR TURN
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SHEET
public static final STR SHEET
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HELIX
public static final STR HELIX
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DNA
public static final STR DNA
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RNA
public static final STR RNA
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CARBOHYDRATE
public static final STR CARBOHYDRATE
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HELIX310
public static final STR HELIX310
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HELIXALPHA
public static final STR HELIXALPHA
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HELIXPI
public static final STR HELIXPI
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ANNOTATION
public static final STR ANNOTATION
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Method Detail
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values
public static STR[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (STR c : STR.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static STR valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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getId
public int getId()
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getColor
public int getColor()
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getProteinStructureType
public static final STR getProteinStructureType(String name)
In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure. Structure Decimal RGB Hex RGB Alpha helices red-magenta [255,0,128] FF 00 80 * Beta strands yellow [255,200,0] FF C8 00 * Turns pale blue [96,128,255] 60 80 FF Other white [255,255,255] FF FF FF Values given in the 1994 RasMol 2.5 Quick Reference Card ([240,0,128] and [255,255,0]) are not correct for RasMol 2.6-beta-2a. This correction was made above on Dec 5, 1998.- Parameters:
name
-- Returns:
- 0-3 or 7-9, but not dna, rna, carbohydrate
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getBioStructureTypeName
public String getBioStructureTypeName(boolean isGeneric)
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isProtein
private boolean isProtein()
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